G49636 (LOC106607037,LOC105028343,LOC103364966,LOC106607038)


Basic Information

Item Value
gene id G49636
gene name LOC106607037,LOC105028343,LOC103364966,LOC106607038
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3027978 ~ 3042595 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU62082
ttttgttgttgttgttttttaaagatattttacttaaatatcccttgtacaaaaaacaaagaccgTAAACATGTGACATAACGATTCTGTGGGTCAACCCCCAGAAtccaataatttaaaacacttggGAATGcagcattaaaacacaacagaataaaaatgagaaTAAATTTAAGACAAACAGAAATCATCCCCCATCTATAGACAtccccccacaaacacacacacataatgttGATCTGAATTAGTCGAATATCGGCAATGTGTTAAACCTGCACAACGATGCGCCAAGTGTTTCTAGAGTCACTGGTGTAACACTGAGGGTCACAATGCACCCTGTGCATCTGTAGAGTAAACCGGAAGTACCATTCAAAAAGAATCCATACAAATATAGAAccatatcttttttttgttttacatacttCAGATTATTGTTAtctacaaaacaaagaaacaaaaatacctCAGCCGGTAATTTgctcattttcaaaatgaaaaaacaacaaatggcTCAATATTCATATTGACAATACAATAGTATATTCCAGTGCTGCAAGTGCAAGAAGGTTATTGtatcttttggtttgttttacagaataaaacatacacGGCACAGAAGTCTGTCCTccagtgtttctttctttctctctccacgCTTTCATGGTGTGAATGTCTCTGCCGCCGCCGCGCTTCAGAAGGACTCCATCTTGGTGGACAACATGAGCTGACAGCCGCTGCTGACGTGGGTCAGGACTTTCTGTTTCAGCTGGGCCACCTGCTCCCGCAGCAGCgacgccgtgttggacaggccggCATTGTCCGTCTTCAGGATCTTCACCTTCTCCTCCAGCCGGGCGATGCGCTCCAGCTTCCGTCGGCGGCACTTGGTCGCCGCCAGCCGGTTCCGCAGCCGCTTGCGCTCCGCCTTGATGCGCTCCTGGTTCTCCATGTCGATCGGCGACATCGGCGGGGACCCGTCGCTGCTCTGCAGGTCCGGGACGGTCTGGGGCTCCTCCTTGAGCGCGACGAGCCGCTGCGACTGCAACGCCGCCGCAGGAAGCGAGGGCTGGAAGTGATGCGCTGCGTGCGTCGGCGCCTGCGGCGGCtgctggtgctgGTGGGGGGGGGCTCTGACCTTTATCTCGAGCCAGGCGTTCCCACAGTTGCCCTCCCTGGCCCCCTGTCATCAAAGCCCAGCGTGTGACGGCCTTGTTTTGTCCCGG

Function

NR:

description
PREDICTED: transcription factor jun-B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU62082 True 1223 lncRNA 0.49 2 3027978 3042595

Neighbor

gene id symbol gene type direction distance location
AMCG00008514 NA coding upstream 6912 3020595 ~ 3021066 (+)
AMCG00008510 prdx2 coding upstream 8057 3016456 ~ 3019921 (+)
AMCG00008509 NA coding upstream 24418 2994941 ~ 3003560 (+)
AMCG00008505 NA coding upstream 121037 2904559 ~ 2906941 (+)
AMCG00008497 NA coding upstream 204882 2815396 ~ 2823096 (+)
AMCG00008516 LOC106601330 coding downstream 44585 3087180 ~ 3102783 (+)
AMCG00008515 NA coding downstream 76514 3119109 ~ 3124136 (+)
AMCG00008517 NA coding downstream 89285 3131880 ~ 3137332 (+)
AMCG00008523 NA coding downstream 310510 3353105 ~ 3355395 (+)
AMCG00008525 NA coding downstream 374916 3417511 ~ 3426260 (+)
G49599 NA non-coding upstream 117039 2910694 ~ 2910939 (+)
G49598 NA non-coding upstream 117350 2909662 ~ 2910628 (+)
G49582 NA non-coding upstream 141840 2885831 ~ 2886138 (+)
G49541 NA non-coding upstream 215085 2812174 ~ 2812893 (+)
G49431 NA non-coding upstream 563311 2445185 ~ 2464667 (+)
G49738 NA non-coding downstream 314104 3356699 ~ 3359529 (+)
G49754 NA non-coding downstream 371586 3414181 ~ 3443897 (+)
G49753 NA non-coding downstream 401407 3444002 ~ 3445127 (+)
G49914 NA non-coding downstream 920533 3963128 ~ 3964014 (+)
G49938 NA non-coding downstream 982506 4025101 ~ 4026246 (+)
G49583 smarca4,LOC102779508 other upstream 139082 2886766 ~ 2888896 (+)
G49523 NA other upstream 257934 2765879 ~ 2770044 (+)
G49340 cdc37 other upstream 816464 2209483 ~ 2211514 (+)
AMCG00008476 NA other upstream 884584 2127715 ~ 2143394 (+)
AMCG00008475 NA other upstream 920186 2088480 ~ 2107792 (+)
AMCG00008526 NA other downstream 387302 3429897 ~ 3885604 (+)
G49980 NA other downstream 1113493 4156088 ~ 4160062 (+)
G49982 NA other downstream 1119463 4162058 ~ 4165483 (+)
AMCG00008580 pnpla6,LOC106564686 other downstream 1519396 4561991 ~ 4572874 (+)
G50215 NA other downstream 2553428 5596023 ~ 5596799 (+)

Expression


Co-expression Network