G49738


Basic Information

Item Value
gene id G49738
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3356699 ~ 3359529 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU62224
CGCAGGAAAGAACAGTTTAAAGGTTAAATAGAACAATTTTTATTACAGTATCGTGTCTTTAACAATAGAAAGCACCCTCGATACAAGGCTAAAACACTGAAGTGTACAGCCTTGACGCAGTAaggctgtgctgtagtgtgtgaCCCAGCCCTGAGCCACTGCAGAAAGGCACTGTATCCACAATTGAGCCCTTTGTAAAGGGGAGCATCGCTGAGAAATCTCACCCCAGCACGGAGATGTGGAAGGCACGCTGGGTGTATATGTATTTCGTGCATATGGCTTTCATTCGTGGGGTGTTCATTCCCACACCCCCTGTCCTGCTTTCTGGCTTGCAGGACCggtttgaatatgaaatatttttttctaaacatttaaaaaggtctTGGAGGATTTCAGTCTGTCTTCCCTTCACACACAACTTACCCCCACTGTCCTGCGCCACCGGTTATCACCGCATGCCAGGTTGAGATGAGCTAAGCTCCTACAGTCTCTATGCACCCTGTGGTTTAGAGCTCTTATTGCAGCTGGAATGTGGATTGTTTGGCACAGTGGAATTGTGTAGTCtctatatgtattatatttgcatGTGGAGGTACTAAGGTGGGCTAATCCGTTCTGAGCTGGGGGGTGATAGTGAATGACCAGTAGGTCTCAGATGGTTTATGGTTAAGTAGCATGGCATGAGGAGGCCCCATAATGAGAAGTTCTGAATAGGAGTAAAAAGTGCTTTACTGCACTGTGTCTATGGGACGTTTGGGGATACACTATCTCGTTGCTAAATTACAACCTACACGCTCCGCCCGGTGTCTCCAGGACAGGTGTTGAGGCAGAGCTGAGTCCACTGGAACCAGGCTTGTAAGAACCGTAAACATCTAAAAACACTTGGTTCTCTCGGTGAATACCCACGCTAGTGCACAATTAAAAACGCATAGAAAAACAGCGAGGTTGGCACGTTTCAAAGGGATGGGGAGGAGCCAGGCTCTCACAGGATCCACAGTGTCAATAGACCCACTTGACCCAGGTGGGTTTTTCCCAGAGGTCTGTATGGCATGGTCTCCCACCGAGCCGCTTCTGTGAACACTGTTCACGTACagaccaacacacacagacgggtggAGAGGGGCTTCCTGTTGGTCAGTTCACACTACAGATGgatatgttgtttttcaatcaTGTACAAAACTTGTTAAAAAGGGACACAAAAAGAATAGTATCCCAAAACCTTTTTAACTGGACGGCTAAAGGAGCGCCGCCAACACGAACATGGGAAAGACACCGCAAATCGCGGTAAACACAAGCAGGGAGGAGAGGGAACAAAAGGAATTCAAAATAGTCTGCTATTGCAGTCCTCTCAGAAAAATGACATCACCTCGCCCCATTAACTGTTCCCCAGGtgggatgatgatgatgaaattTAAACTTCTGTATACAATTTAACAAACTAAACACTAGAGAGGTGTCTGGCAGGAATAAAAGTTCGGGGGGAAGCAAGGGGTTAAAGATTGTCGCTGGCAGCTCATCCGCTAGCGGTGCAGACCAATCAGGAGCAGGCTGACGGGACTGACCCGCCCTCAGCCTGGCTAAACTGCTGTAGGTGCGTGGCTCTCTTGTCAAACGGGGGGCGGAAGGGAGATCGGGACGGGAGTGGCAGGTCTGTCCGTCACAGCTGTGTGCTGGAGGCCTCCTCTGTGTCGTCGGTGTTGGCTCTGAGTTTGGAGAGAGCAGCGTGAATCCGGAACTGAGTCCTCGACTCCATGGAGTAGTCCTTGTAGTGGGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU62224 True 1778 lncRNA 0.49 2 3356699 3359529

Neighbor

gene id symbol gene type direction distance location
AMCG00008523 NA coding upstream 1304 3353105 ~ 3355395 (+)
AMCG00008517 NA coding upstream 219367 3131880 ~ 3137332 (+)
AMCG00008515 NA coding upstream 232563 3119109 ~ 3124136 (+)
AMCG00008516 LOC106601330 coding upstream 253916 3087180 ~ 3102783 (+)
AMCG00008514 NA coding upstream 335633 3020595 ~ 3021066 (+)
AMCG00008525 NA coding downstream 57982 3417511 ~ 3426260 (+)
AMCG00008527 NA coding downstream 102874 3462403 ~ 3469127 (+)
AMCG00008529 NA coding downstream 208030 3567559 ~ 3581461 (+)
AMCG00008534 NA coding downstream 223592 3583121 ~ 3592683 (+)
AMCG00008533 LOC107553681 coding downstream 313172 3672701 ~ 3673436 (+)
G49636 LOC106607037,LOC105028343,LOC103364966,LOC106607038 non-coding upstream 314104 3027978 ~ 3042595 (+)
G49599 NA non-coding upstream 445760 2910694 ~ 2910939 (+)
G49598 NA non-coding upstream 446071 2909662 ~ 2910628 (+)
G49582 NA non-coding upstream 470561 2885831 ~ 2886138 (+)
G49541 NA non-coding upstream 543806 2812174 ~ 2812893 (+)
G49754 NA non-coding downstream 54652 3414181 ~ 3443897 (+)
G49753 NA non-coding downstream 84473 3444002 ~ 3445127 (+)
G49914 NA non-coding downstream 603599 3963128 ~ 3964014 (+)
G49938 NA non-coding downstream 665572 4025101 ~ 4026246 (+)
G49944 NA non-coding downstream 675220 4034749 ~ 4035052 (+)
G49583 smarca4,LOC102779508 other upstream 467803 2886766 ~ 2888896 (+)
G49523 NA other upstream 586655 2765879 ~ 2770044 (+)
G49340 cdc37 other upstream 1145185 2209483 ~ 2211514 (+)
AMCG00008476 NA other upstream 1213305 2127715 ~ 2143394 (+)
AMCG00008475 NA other upstream 1248907 2088480 ~ 2107792 (+)
AMCG00008526 NA other downstream 70368 3429897 ~ 3885604 (+)
G49980 NA other downstream 796559 4156088 ~ 4160062 (+)
G49982 NA other downstream 802529 4162058 ~ 4165483 (+)
AMCG00008580 pnpla6,LOC106564686 other downstream 1202462 4561991 ~ 4572874 (+)
G50215 NA other downstream 2236494 5596023 ~ 5596799 (+)

Expression


Co-expression Network