G49811


Basic Information

Item Value
gene id G49811
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3414181 ~ 3443909 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU62317
CAAAGTTAATTAGTAAATAcatctcagtatagtgtatgcgtctcagtctcagtatgtagtgtatgtgtctcagtatatagtgtatgcgtctcagtatgtagtgtatgtgtctcagtatgtagtgtatgtgtctcagtatgtagcgtatgcgtctcagtatgtagtgtatgtgtctcagtatgtagtgtatgtgtctcagtatagtgtatgcgtctcagtctcagtatgtagtgtatgcgtctcagtatgtagcgtatacgtctcagtatgtagcgtatgcgtctcagtatgtagcgtatgtgtctcagtatgtagcgtatgcgtctcagtatatagtgtatgtgtctcagtatagtgtatgtgtctcagtatatagcgtatgcgtctcagtatagtgtatgcgtctcagtatatagtgtatgcgtctcagtatagtgtatgcgtctcagtatgTAGTGTATTATGTCCCTAATGGCGCCTCATAGTGCAGTGCCTGAACCTCAGC

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis
ko04927 Cortisol synthesis and secretion

RNA

RNA id representative length rna type GC content exon number start site end site
TU62317 True 505 lncRNA 0.41 2 3414181 3443909

Neighbor

gene id symbol gene type direction distance location
AMCG00008528 NA coding downstream 43568 3356714 ~ 3370613 (-)
AMCG00008524 NA coding downstream 67408 3345535 ~ 3346773 (-)
AMCG00008522 nfix,LOC107098150,LOC106517806 coding downstream 178615 3230842 ~ 3235566 (-)
AMCG00008521 nfix,LOC106601192,LOC107757045,LOC103393624 coding downstream 241210 3148638 ~ 3172971 (-)
AMCG00008518 rnf11a,LOC103044796,LOC107757048,LOC108441179,LOC107694828,LOC107583209,LOC108259033 coding downstream 283122 3128983 ~ 3131059 (-)
AMCG00008530 NA coding upstream 58853 3502762 ~ 3504414 (-)
AMCG00008531 NA coding upstream 77560 3521469 ~ 3528475 (-)
AMCG00008532 LOC106569090,LOC105012159,LOC107599908 coding upstream 110630 3554539 ~ 3557842 (-)
AMCG00008536 NA coding upstream 156859 3600768 ~ 3611264 (-)
AMCG00008535 NA coding upstream 174740 3618649 ~ 3625092 (-)
G49806 NA non-coding downstream 22091 3390203 ~ 3392090 (-)
G49802 NA non-coding downstream 34857 3373544 ~ 3379324 (-)
G49614 NA non-coding downstream 439028 2974949 ~ 2975153 (-)
G49606 NA non-coding downstream 503553 2909662 ~ 2910628 (-)
G49547 NA non-coding downstream 590205 2823241 ~ 2823976 (-)
G49858 NA non-coding upstream 247471 3691380 ~ 3693261 (-)
G49860 NA non-coding upstream 277060 3720969 ~ 3735477 (-)
G49863 NA non-coding upstream 279320 3723229 ~ 3809262 (-)
G49871 NA non-coding upstream 335866 3779775 ~ 3781104 (-)
G49984 NA non-coding upstream 718266 4162175 ~ 4163650 (-)
G49605 NA other downstream 505516 2906675 ~ 2908665 (-)
AMCG00008491 prkcsh,LOC102779661 other downstream 711759 2636915 ~ 2702422 (-)
AMCG00008474 NA other downstream 1329156 2073783 ~ 2085025 (-)
G49375 NA other downstream 1533219 1879621 ~ 1880962 (-)
AMCG00008466 NA other downstream 1574082 1819774 ~ 1840099 (-)
AMCG00008547 elof1,LOC103393660,LOC100703874,LOC106589640,LOC106935058 other upstream 325775 3769684 ~ 3777354 (-)
AMCG00008602 NA other upstream 2143166 5587075 ~ 5610329 (-)
AMCG00008609 NA other upstream 2211780 5655689 ~ 5786328 (-)
G50267 LOC107575789 other upstream 2304981 5748890 ~ 5885450 (-)
AMCG00008608 NA other upstream 2342711 5786620 ~ 5793995 (-)

Expression


Co-expression Network