G49871


Basic Information

Item Value
gene id G49871
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3779775 ~ 3781104 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU62382
GCCCAATATTTATTAACTTCTTTTAAGGTTTATTCAGTCATGATTTATAATTAGAATGTCATGAAGCAAGCTGAAACTGTAGATTTCAACAAActcatttaattgcattttttattacatacatCTCTCGTGACATTTTTTGTAACGAGTCTTTGTGCTTGTCAAATGCACTTTGCGCCCTCCAGCGGAACTAATCTGTAAATGCGCCTTGAGACACATTCAGTTCTACCTAAATTAAAGCAAAGAGAATgtataattcaaaatgtttattgttaaaaaaaacaatcacacttCTTAATACAATATGGCTCAAGTCTAGCAAACATGTTGatcaacattttccattttattaccagtcaaattaataaaataattcacagcTACTTAATTTTGATTGTCTGTGGGTGATatcatttctatatatatatatatatagaaaagacctagaagacaatcACATAAAAGATTGGAAGATTCAATcttaaactttgcaggtgtgacatggaaaagataatctgtagattgaagcaaggggaaacatcttggggagtcagagagaaagggagagacagaTACATACTTTGTTTTATGATCAAGTATGATGTcaaacaatgtaacaatataCCGATGTCtggtaaatacatttaaccctttgcagccagCCCATATTAATTTCTACATATCAGAAAAAGCAGTTTTGGaccacacaaacataaataatgagTATTGATctctgtaatacatttttgattagCTAAAAACATTAGGAAAAGGAATGTCTAAACTGATTGTCCTGTGACTGTTCTGTTTATGTGTCACTATCCAACTTTAGTGTAAAATAGCACAGAGGGGAATAGCAAATGTAGCTGTAAAACAATAATCTGGACCAGATTCACATTTCCAGATCGGTGGCGGCAGTGGCCAGGGAGACGCCTACAAGAAACAGACGAGGCTCCTATTGCTACAGCAGGCCGATCCGATTCCGGCTGCGGAGGCTCCCCGGGGGGGTCAGATGGTGCGGAGGTTGAGGGCGGCATAGCACAGGTTGACGCCAGTGCAGAGCAGGCCCAGCAGGTTGCAGAGGGAGGACAGGCCGTGGTAGCGGAAGAAAGAGCTCCGCAGACCCTTGTACTTGGGGTCCTGCTCGCGCAGCTTGGTGTAGCCCTCCTTGTTGGAGCGGAAGCCCACCTCGCCTCCCAGCCCGTGCTCCCGCTCCACCTCGTGCATCTGATGCATCAACTCAGTGACGGCCGGGCCGAACCACTGGGCATTCAGACCCGCCAGTATCAACGCGCCGAAGAACAGACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU62382 True 1308 lncRNA 0.42 2 3779775 3781104

Neighbor

gene id symbol gene type direction distance location
AMCG00008535 NA coding downstream 154683 3618649 ~ 3625092 (-)
AMCG00008536 NA coding downstream 168511 3600768 ~ 3611264 (-)
AMCG00008532 LOC106569090,LOC105012159,LOC107599908 coding downstream 221933 3554539 ~ 3557842 (-)
AMCG00008531 NA coding downstream 251300 3521469 ~ 3528475 (-)
AMCG00008530 NA coding downstream 275361 3502762 ~ 3504414 (-)
AMCG00008553 NA coding upstream 38911 3820015 ~ 3822415 (-)
AMCG00008558 NA coding upstream 109814 3890918 ~ 3912084 (-)
AMCG00008557 NA coding upstream 161064 3942168 ~ 3946340 (-)
AMCG00008563 farsa,LOC107679365 coding upstream 188242 3969346 ~ 3980969 (-)
AMCG00008561 NA coding upstream 201672 3982776 ~ 3995553 (-)
G49860 NA non-coding downstream 44298 3720969 ~ 3735477 (-)
G49858 NA non-coding downstream 86514 3691380 ~ 3693261 (-)
G49811 NA non-coding downstream 335866 3414181 ~ 3443909 (-)
G49810 NA non-coding downstream 342428 3425782 ~ 3437347 (-)
G49806 NA non-coding downstream 387685 3390203 ~ 3392090 (-)
G49984 NA non-coding upstream 381071 4162175 ~ 4163650 (-)
G50020 NA non-coding upstream 537679 4318783 ~ 4321888 (-)
G50126 NA non-coding upstream 1039136 4820240 ~ 4829621 (-)
G50268 NA non-coding upstream 2160091 5941195 ~ 5941527 (-)
G50337 LOC104962440 non-coding upstream 2561572 6342676 ~ 6342964 (-)
AMCG00008547 elof1,LOC103393660,LOC100703874,LOC106589640,LOC106935058 other downstream 2421 3769684 ~ 3777354 (-)
G49605 NA other downstream 871110 2906675 ~ 2908665 (-)
AMCG00008491 prkcsh,LOC102779661 other downstream 1077353 2636915 ~ 2702422 (-)
AMCG00008474 NA other downstream 1694750 2073783 ~ 2085025 (-)
G49375 NA other downstream 1898813 1879621 ~ 1880962 (-)
AMCG00008602 NA other upstream 1805971 5587075 ~ 5610329 (-)
AMCG00008609 NA other upstream 1874585 5655689 ~ 5786328 (-)
G50267 LOC107575789 other upstream 1967786 5748890 ~ 5885450 (-)
AMCG00008608 NA other upstream 2005516 5786620 ~ 5793995 (-)
AMCG00008633 prkaca,LOC108429687 other upstream 3057973 6839077 ~ 6885687 (-)

Expression


Co-expression Network