G49980


Basic Information

Item Value
gene id G49980
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 4156088 ~ 4160062 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU62528
acgggaaagggagcaaggaggaaaacaatcaagaacgcgaggagcataataaagttattaagttattaaacaaacatgctaacaaaacaaattgcaatacagaaaaatctaaaaactatggacagatagaaccatcccacccacccgccacctgcatccactgacaaatctttaatcctcattaaaattaaatcaatcaatcttaattttatatagtggaacaccatgccaaggatgtcacaacattaaataaagaataagtgcatcataaaattaatacatcatttaaatgttttgctacagtgcagtaaaatgcatgaatcacatttaatcacgcattaagtttgaggattataatgctaaagtacatttagaaaccccattaaaatcgcaatctacccccaaaacaaagtccctCAGATTttcccattgccctgccgttaaatacaagaagtagaagtgtgttcatttggctgcattagtaacccttccatattgttttggttttttttttgcactttcaCTCAAATCATTATCAATGCACcttttaaaattacttaatatctactgcttttacattttgtaaaataactaaaactggtagattaatatacattctgtggcacttatgttttaagacaaaaataatgcagtggtcTCAATCTACAGTGATTATGAgtatgcacaaatgtactctataatcaaagtaataatttatttacttttgagaatttacagctttcttttggCAACTTTATGACGTTTTTAAATTGTCgaagtgttaaatatgaatgcttgTGGCCATTTCTaaatttgatacaggagataacgataaacaaaatgctttccccCGCTTGTTCAACAAACATTGCCGATTGATAACCcaggaaaaaagaaatggatCTAAATGCAACGAAATAACCCAATCAACGCTTGTAAAAGCAACGCAGTTTAACCGAAAACACAAACTGCTGTGTGCACGCCTGTGTGCTGCTATATATGAGGGgcagttcaattcaaaattaacaaaaaaaaaaaaaaaaaatcatataccagaatggatatatataatttaccaaaatggatatatcatatagcagaaaaaataattcatataccaaaatggatatatcatataccaaagtggatatttcacaaagcaggaaaaaaaacgtataccaaagtggatatatcatataccagaaaaaatatttcacatagcagaaaaaaatatataccaaagtcacgtgGTGTAGATGCTGgtttggacatgcgcagtgcgcGCAGTTGGTGAGAGACGAGAGCGGATCCTTCGCAGGTCACAGGCATGAGAGCCGAGTGACGGACACATCGATCGGTTATGAGCAGGAGAGGATCATTATCGctgactgtatatatacatgaatatacatatattacagttaTAACAGTTGGTACTGGTACTGTATTTGTGgtttgttatgtattaatgacgttgttttttaatgtaatttggtggtgaccaatgtgatgctgttcaagtttataacaaacGGCATCACCTTGACAGAACATATCGGCTAATAAAGTGAAACCGATCTAGACTCATGACGGTTCAGTATTGCCCTTACATACGTGTCAAACGATCGTCAGACACAATGACTCATCCTTTTCAATTAAGGGTGACTGCATAGAGCTCCTTTACTTCCATTACACCATTCTGTCCATAAGGGTGAATGGAAAAATCAACTGAAACATAATTACAGACCAAAATAAGGCACACAGTGTTCAGGTAGTTGTAACACTGCTGTCCACATGACCTGCAAAATGGACTTTGGTGTCTTGTGGTATTCATCGCCTTATGCGGGGGTCTTGGTttcttcagatttttgtttcaaaCTAAAGctctcatttaattaattaactttattatgTAATTGACTGGGTACATGACCCATTGGTGAGAGGGCTTAAAACAGTGTTTCCCAAATCCTAGTCCTGGGgatagtttaaaataattggcacAATTAGAGCTTATTAATAAATTTAAACTATTGGAGACATCAGGTTAAGTATAAAAGTTTAGGGGTCTATGTGGCACATACATTCTCCaaagtttgtaatttaaataattttaagaatCAAGTACagcaaatgattagttcaatttaTGTTTCAGTTAGTTCATTCAGGgtgcagattaattaaaaacccACAGGACATTGgatccccaggaccaggattggcaAACACTGGCTTAAAAGATTACTTGGATTGGCTTATCGCACCAATTATAGCAGACACCCGTACACATGGCAATGTATAGTTTTTACAACCATTTTCATAccattacaaaatgcagtaaAGACCACAATTGCATATCAGGGAGCATATatcagttcaattaaggaaaaGGGAGCTGGGCagagttggaaaaaaataataatctgaatacACGCACAGCCTCCAGGAAGTGTGTTTCAGACCCCTGACCTTAAGGAGAAGGACAAGAGTGAGGTTGGGCTGCTGCAAACTCTGCTCGTCAGTCTTCCCAGTCAGCACGTGAACCTGGCTTGCCTGAAGTCATGCCACACCTGGAGCAGCCTGCCAGGCCAGAAGCCCGCCACAGTGATCAGTCTGGAGAAAGCACATCTCTCATAGGCCATGGAATGCAGGTTGAATAAACTACGCCAAGAGGAGCGGGTGGGGTGGATACAGAGCCTCTGCAGGCACAAGCCCACATAGATGTCCTCCAGGGGAACAGGCCTCACTGAGCTGGACGCCCACAAGATCTTCCTGGCCAGGTTCACGGAGAAAACATACCCTGTTCCTGAGACGTAAGGGGGATAATCAGTCTCGGGGTAGACGTCCTCAGGCATGTACCACTTGCTCTCTTTGTCCCTGCGTGGTCGCCCATCCCCAATGACCACCCCTGTGATGAAGTCCTtcttggggtggggggcacGGGGGTTGAGGAGCTTGTTGACCAGGTAGTCCACATTGAGGAACATGTCCGTGTCGATCTTCATGGCATAGGAAGCCTCCGGGCAGTAGGAGGCCAGCCATTCCATGATCGCCATGGTCTTGATGGTCAGATTGCGGTAGCTGTCCAGGAAGTTCTTCTGGATGATGTCACGGTGCTTCTGGCTCTCCCTCTCCAGCTTCACCTGGATCTGAGAGGCTTGGTCCCCAGAGGACAGCCCCAGCATGAAGATCCGGAGAATTTCCACCCCCGGGACAGAGTTCTCCTGGCCCCAGGTCTTTCTTATGGCGTCTCTGGCTGGGCTGTCATGTGGAGCCACCGGGACCATGAGCACCAGAAAGGGGGTTCTCCCTCTGCACTTGTCTGGCTCATTCAGGACATACTTATAAGTAGAGGGAGGAGCGATCTTGTAAAGTTGTGGATCAACACAGGATCCCTGCCCCCATTCCAGGGATCCTGCTGCTTTCCAAACCCAGAAGGCCAACCAGCAAGCCAGTCCTGTAAACACCAAGCACTTGCCCAGCCTCCAGCACCACGTCTTCCACATTCTGCTGCCCCTCCCACTGTCTCCTCCCCCCGTCTCTTTCAGagctgttcctctctctctaggACTCTCATTTTACAAGCAAAAATGACTAAAGCTGCCAGTACTTCCCTTTATGTAACTTGAAAAATGCATCTTTCCACCCCACCTCTCAAACCGACGCCCCACACACGTTCGTCTTACTCTCTCAGTTGCACAAGCCATGCAGACACTCTTTTCCAGCGACTGCTTAATGTTTCTTCTGCTTGCAAGGAAGACTCCTCCCTTGACAAACAACAGGTCTGCAGCCTTCCTCCCCTACACAGCTGCACTACTTCCGCTCACCAGAATCCTGAGCTCCCAAAGTGTCCTAGCTGTAGTAACTGTactaaagcaaattaaataaaatcattacaaataaaaaaaataataataatccagctTGTCCTCTTTAGAGGTTGAATTCCCTCACCCAGCCGTTAAGAACATA

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU62528 True 3975 TUCP 0.42 1 4156088 4160062

Neighbor

gene id symbol gene type direction distance location
AMCG00008569 NA coding upstream 57932 4097796 ~ 4098156 (+)
AMCG00008559 NA coding upstream 132595 4022525 ~ 4023493 (+)
AMCG00008560 NA coding upstream 145943 4009198 ~ 4010145 (+)
AMCG00008555 NA coding upstream 195038 3957541 ~ 3961050 (+)
AMCG00008556 gcdh,LOC102794743,LOC100704678 coding upstream 216175 3934002 ~ 3939913 (+)
AMCG00008579 NA coding downstream 350928 4510990 ~ 4512060 (+)
AMCG00008588 NA coding downstream 640392 4800454 ~ 4812907 (+)
AMCG00008587 NA coding downstream 664065 4824127 ~ 4835656 (+)
AMCG00008590 NA coding downstream 739383 4899445 ~ 4904073 (+)
AMCG00008593 LOC107093428 coding downstream 882692 5042754 ~ 5055756 (+)
G49944 NA non-coding upstream 121036 4034749 ~ 4035052 (+)
G49938 NA non-coding upstream 129842 4025101 ~ 4026246 (+)
G49914 NA non-coding upstream 192074 3963128 ~ 3964014 (+)
G49753 NA non-coding upstream 710961 3444002 ~ 3445127 (+)
G49754 NA non-coding upstream 712191 3414181 ~ 3443897 (+)
G50011 NA non-coding downstream 147764 4307826 ~ 4308836 (+)
G50055 NA non-coding downstream 302300 4462362 ~ 4468763 (+)
G50061 NA non-coding downstream 327937 4487999 ~ 4488238 (+)
G50066 NA non-coding downstream 355434 4515496 ~ 4527552 (+)
G50086 NA non-coding downstream 422840 4582902 ~ 4583205 (+)
AMCG00008526 NA other upstream 270484 3429897 ~ 3885604 (+)
G49583 smarca4,LOC102779508 other upstream 1267192 2886766 ~ 2888896 (+)
G49523 NA other upstream 1386044 2765879 ~ 2770044 (+)
G49340 cdc37 other upstream 1944574 2209483 ~ 2211514 (+)
AMCG00008476 NA other upstream 2012694 2127715 ~ 2143394 (+)
G49982 NA other downstream 1996 4162058 ~ 4165483 (+)
AMCG00008580 pnpla6,LOC106564686 other downstream 401929 4561991 ~ 4572874 (+)
G50215 NA other downstream 1435961 5596023 ~ 5596799 (+)
G50243 NA other downstream 1578479 5738541 ~ 5742750 (+)
G50448 NA other downstream 2797549 6957611 ~ 7018125 (+)

Expression


Co-expression Network