G49984


Basic Information

Item Value
gene id G49984
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 4162175 ~ 4163650 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU62533
GTTTACTCTGGTTACAACCTGCCTTTACTATGCTTTCCTACTCTCTACCATGAATGAGACATGGTCTGCACTGATCATGGTGTATTCGTGGTATTCCCAGGGTCCAGTGGAGTAAAGCACAGTGCAGGCGTGTTGAACCCATTCGAAACCATATTCAAAGTGCAAAGATCCTATGATCTTACCAGGGTGTATAAGGCGTAAAGGgttagatatatacatacatggtGCAGTACATTAACATTGTAAAGGGGGGGTTGTACAGGCATGCTGCAGGCTCGTCTCCATTGGCATATTGTGCACCATCCTTAATAAGAACAGTAGCCATACCcataaaacaatatgttttgAACAACTTTCAGGGTTAAATGCAGTAACTTTTCCGTTAACTATTGTACTGACTTCAGTGGGTGGTAGCGCTCTGTGGAAAACCCTGAAACCCCAGAGGAAATCCCATGGGGGAAACTGAAGTGAAACGTCATACAGCCACATGTAACTCTTCACCACAAAGCCGGGCCTTAGTCGCATGGATTCATTTTAGAATACAAGGCTAGAACCTGCATGAGTAGCGCTGCCTGCTTTCCCCATTCAGTCTGTGCCTTGAAAGCTGTAATTGGCATCCTTAAATCCGTAACAGGAGATCTCATGACAAATCACTCCTTccttaattactttaaattaaaatgacagtgtgaCCTGTAATCAGGTGATCAGGAGTAATTAAGAAGTCAGTCTGTGTAATTATTGAAGTAAAAAGATAGTTGTCAAAAGAAAGGGACAATattgttagtttttatttaattttttaactaACTTCACTAATCTGACTCAAGGGCCTTCAGCTCATCACctggctgaattaaaaaataataataattaaaaagtcattttGACAGAAATCCACAATCCATAAATACATCATTTGTCATGTTCGCCCTGATTTAATTGCGAAAAAGTACAGATGAGCAACTATTAATTACAGCTTTAGAGCCAAGTACTGACagccaatgaaaatgacaaacgCAGGCAGCACTCTGTCAATTCCAAACCGGTACGGTGGATTCACTATTCAAGACAAAAGGGGAATCTGAAATCTGCTGAATTGAGGTTTGGGCATGGATTGGCATTGGAATGTTGCATATTTCTACTCAATGTTTCCATATCTCTAACCCCTTCTCACGATATTAATCCCAGCCCCTCCTTGATCTTCTCATGCCCCTACAAGGCATTCTTCCACAACGGCATCACTTGCAAAGCAACCTCAGGCAGCCTTTGACTTCCCCATAAAGTACCTTTCTGAGATTCTATAACAGTTTATAGACTGGTTTGTAAGTCAATGTGACTGTGCTTATTGCTGGCATGTATCTTAACCAGTGTTTCTGTATATGTGAACAAAGACCTGTGTATAAGTActttatcaaatgtatttattatctgtTTTCTTATCCCAATTGTCTGGGAGAGACCTGAAGTTCTACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU62533 True 1476 lncRNA 0.40 1 4162175 4163650

Neighbor

gene id symbol gene type direction distance location
AMCG00008564 NA coding downstream 2579 4158622 ~ 4159596 (-)
AMCG00008565 NA coding downstream 25057 4136132 ~ 4137118 (-)
AMCG00008568 NA coding downstream 47531 4108019 ~ 4114644 (-)
AMCG00008567 NA coding downstream 54162 4104743 ~ 4108013 (-)
AMCG00008566 ilf3 coding downstream 70406 4069088 ~ 4091769 (-)
AMCG00008571 NA coding upstream 1398 4165048 ~ 4174152 (-)
AMCG00008570 NA coding upstream 74934 4238584 ~ 4250756 (-)
AMCG00008573 NA coding upstream 115503 4279153 ~ 4280552 (-)
AMCG00008576 LOC107570893 coding upstream 119069 4282719 ~ 4292278 (-)
AMCG00008575 NA coding upstream 147344 4310994 ~ 4318313 (-)
G49863 NA non-coding downstream 352913 3723229 ~ 3809262 (-)
G49871 NA non-coding downstream 381071 3779775 ~ 3781104 (-)
G49860 NA non-coding downstream 426698 3720969 ~ 3735477 (-)
G49858 NA non-coding downstream 468914 3691380 ~ 3693261 (-)
G49811 NA non-coding downstream 718266 3414181 ~ 3443909 (-)
G50020 NA non-coding upstream 155133 4318783 ~ 4321888 (-)
G50126 NA non-coding upstream 656590 4820240 ~ 4829621 (-)
G50268 NA non-coding upstream 1777545 5941195 ~ 5941527 (-)
G50337 LOC104962440 non-coding upstream 2179026 6342676 ~ 6342964 (-)
G50361 NA non-coding upstream 2462459 6626109 ~ 6627025 (-)
AMCG00008554 NA other downstream 290906 3430814 ~ 3871269 (-)
AMCG00008547 elof1,LOC103393660,LOC100703874,LOC106589640,LOC106935058 other downstream 384821 3769684 ~ 3777354 (-)
G49605 NA other downstream 1253510 2906675 ~ 2908665 (-)
AMCG00008491 prkcsh,LOC102779661 other downstream 1459753 2636915 ~ 2702422 (-)
AMCG00008474 NA other downstream 2077150 2073783 ~ 2085025 (-)
AMCG00008602 NA other upstream 1423425 5587075 ~ 5610329 (-)
AMCG00008609 NA other upstream 1492039 5655689 ~ 5786328 (-)
G50267 LOC107575789 other upstream 1585240 5748890 ~ 5885450 (-)
AMCG00008608 NA other upstream 1622970 5786620 ~ 5793995 (-)
AMCG00008633 prkaca,LOC108429687 other upstream 2675427 6839077 ~ 6885687 (-)

Expression


Co-expression Network