G50212


Basic Information

Item Value
gene id G50212
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 5586800 ~ 5591201 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU62807
GTGCATTATTGCTATCTGCATGCAATACTTTGCACTTGTCTGTACTTGGTTTCATTCACAAGCTGCCTGCTCTGTCTTAAATGGTGTCTTACCGCATTTTGGTGTCCCTTGCAAAAGTGATATGTTTACCGGCCAATGTAAATCAACACCAGGGTTACAGTTCTCTTTACAGCTACATTACAATGGTCCTTTTGTGTTCTTCAGCTCATTATAACCATTCACTTCCTGTAACAAAAAGGGggtaaaaaaattaataaataaaaccaaatgatgcatttataataacaaatgtgctttattaattattattattactttttggGGGGGCTGATAACACTGTATGGCATATGATGCTACCAATTTACAAAAAGaatactattaaaaaacaaaaaaaccttaaGTGCTTATTATAGTTGTGCAATATCACGGAATACTGTTTATACAACTAAACAATACgattcaatacaatacaattaacaaatgaagttaaaatactgaaaattcAACATTGTTCACAGAAGACACCACCTCGACAACAGAGAGGGTGCTTTTAGATAATATGGCCATTGTATTCCTTTCCAACGTAAGAGTATTTGTCACAAGCCCCACAATAATCTTTGGTTTGACTCCCAAGGTTGCAGCTGCAATGTACTGGCTTATGTCCTCTGCAGTTTTCACCTACTATTGGACATAGATATTGGCCTTTCAATCCTAAAGAAAagtttgtattcttttttaattatttgaatatccTCACTGCCAGAAAAACACCAATGCACAAGGAGCAATCTTTTTGGTCTTTCTGGCAATGTATACAGATTTCAATTAAACTCAATCATAtttcatgattaaaaaacaaaaacaaaccaacaaaaaaaacagtaaccagttttacatgttttacacaCTGACAGAGCGACAGAACAATACCCTCTTTACAACGAACAGCCATTCAAAATGAGTTTTCCCAAACATAACCGCAATCCTTTCATATAAACATGGTGAGTCACAACAGTCCTGTGACCTGCTGTCTTGGGCCCCCTCTAGTGGTTGTTGAATAAAAACCACTTACCACTGTTTCCGATGCTTGTATGAATCACAGAATCAGCTACGGGAATGTGAACCCAACTGATGGGGCATACATTTCCAACACCATATTGGAATATGTAGTATTTCTACCAGTCTACATGTATAACACTGTCAAAGCTTGCGCTGCACAAAAGCAATCCttatctacttttttttttctgaccccACCCCGACTATGTGGCTGATGATTTTATCAAAAGCTACTAACATGGCTTCCCATATATGCAttaatatagttttttgttttttatttgagtcATCTGGGTAAAGTACCTCAGTCCGTCATTCAATAAGTTTCCCAGAAAACACCACCCCGTTGGCTGAACCATGCTACAGAAAACCACTGGTGGGGGGTAACTAATATCTAATAACATTACAGAGGAATAAGCCAGTTTTTAAACGGGAGAAAAAGCATCCACAACAATCCAATGACAAACCATGTAAATATAACAACATAAATAGTGACAATTAATCGTTTCCTAAATATGTACCGtgtacagaaataataatacaataagataaaaaaagaagcagcaaaaatacaatacaatacaaacccAATAAACAAGTGCAAAGGAATTTGGTCAGTTTGTGCAGGAATAACAGGGTATCAAGAACACAAAAAAGTTGCCAATAGAAAACCTCATTCTGTGCCCAACTGTATCATGGACTTCATTGTCGGATAGCGATTTTGGGTCATACAGTCTAGTGTTTGTTGCACACCTTTGACAATACAAATTCAAGTCTGTTTTGAGAACTGAATTGACCTTTGATATACATTCACAGGGGTCACTGAGGGTTTGAAGCACTAAAAGTGGCCCCCAACACTCAGGTGATCACCCCCAATTTGGGATATCTACTTTAGgtcttttttatttccctcctaACTTGATTCACAAGTTCGAGCAGAGGCCTGACAAACCAGTGAGCATCCTCACTGCCACCGGTTGGATTGTTGTTTTGCAACACTACAAAATAAAGCTGAACGTATCTATTAATCTCGTGCACATcttctaaaaaatattttggacaGTTTATGGGTCCCTATCAAATTCACTTCATCAGTCTTGATGGCTATCAGCACTGCAGGAACGTCCCGTCTCCTCCGAAGCGACACGCACTCACAGAAAGCTGACGCTGATGACCAGTACGGAAGTCTCTACGGCCACCCGAGAGGCATCGGCATTCAGAATCTCGGCTGAATCGCTACTCCCAGaaactcctcctcctcttttgccgaacaaaaaaaaaactgtcacagAAGCAAAAGAGGTCACGGTGAAAGTCCTCCCCACTGGCTTTGCCGTCGAGCAATCAGCCATGGCATCCCAATGCAACGGACCGAAAGGCGATCGGATAAGTGATCAACAAATTACTGACCTAACAAAATACCCTGTGGAAATGGCGGACAGTAGAGGTTAGGTCTCTTGCTGATGTTTGTCCACTTTACCCACAGAGGgcaataatagaaaaataaaataatggtccCGTTAACATCTAATgtagaagacaaaaaaaaaaaaaaaaaacagatagcAGAACAGTATTATTCCTTGCTGAAGCACATCATGggataatacacattttttcctATTGGCTGTGTTGATAGCTAGTTCCTATGCACGTACCTCTTTCTGTATGGGAGAAATCACATCTGTGTGACTTGGGCTTTTTGGGGCTTTCAgttttctcattaaaatatgGATTAAAGGACTGATCTCATCCTTGACCGATCTTTCATATTAAGCGAGTTAAGCTGATGTAAACCTTACTGTGCTCTATGCTTCTTACGACTGACTTGATAAAATGCCTTCGGTTTTGTGATGATGGGCCAGGGAGAGATTTCGCCCGGTGAAGTCTGCTCTCCCGTGGACGGTAGGTTGGGATGTTTGGCTTTCACCATAAAAAGGTCTTTCCCCTGTTCTGCCCGTATAGCatcttaacaacaacaacaccggATTGTGAGCCTGTGGCACAGGGATATATCTGGAAGCACCACAAAATATCCCCAGCTGTAAAAACCCCAGCTTGTTCCATGTAGATCactgaaatgctttaaaataagtgtCATAGTTTGCTGGagaccaacaataataataactgaagcAATTCGAGTTTGCTTGTCGTCTTCCTTTGGTATATTCCCGGGCAGGACACTGGCTTGTAGTAAGCTGATCAGTGCCATGGACAGCCAGAAAGTTGAGTCTAGTATGAAAGTTGCATAGctttttgttactttttcaaaacacacacacacacacacacacacttttcacaATTGAGTCTGGACTGGCTGAAGAGGATCTACATACAGCCCTAAAGACAGCATGAAAAAATACTGAATGAAAATGAACCAAATATCTGACTAAATACACGTTTTTGTATATAGCTGCACTCCCAAAGTCATGTCTCAGTTATGCATTTAACTGTTTAGGAAACATTACTACTTCAGTTTATATCTGGTAGTCAAAGGTCATATCCTGAATACCAGGAAGTGCACATTTTTCTCACTAAAGTTCTCTTAAGTGCACATAACTAAACTGTAACAAAACTTGTAATTGGTAATGGAAACTAAGACACTAAATAGGCATTAGGTGGGGCTGGAGCACATTCATACGCAGTCTGTATAGTTGTGTACAGCCTGATTTGGAGAAGATTCGATTGGTTCCTTATAGAGGATTTTGGTTTTCTTACTGTGGAAGAGCTCCGGCCTCCCCGTTTATGCTTGATGTTGATGCTTCTTGATGACTTGATGGTGCCAGGGGATTGTAATTGGCACAAACAAAAGCCTTTGTAGGTTGGAGGCTGTGAGTGTCTCAGCTGCTGTCACCAGGGGGCCCTCTTCAGAGGCAAATGTTGATCTGTTTGGCAAGTTCCCTCTCCAGATCAGATATGAGCGTGTCAAAGTCCTTCAGGCTAAGCCTAGTGGTGAACGGGGCATCCAAATCAAGGGCTTGGGGATCCAGGGGGAAATCAGTCATGTAGAGAGGCCCCTGGGCATCCCAGTCTTTCTTCCTCAACTggccccctctctccccctcctcttcctcctcctcctcgctgtcAGTCCCTGCCACCTCGTCATAATCAGCTTCCGGCATAGACAGAAAGTCCCGCCCACACACACTCCAGTCACCCGCGTAGCGATTGCAAGGTGGGCTCTCCAGTCGGCCCCGCCCCCTCCTCGAGACCACCGAGTCCTTGGATAGTTCCAGTCTCAAGGCTGGCCTCTGGTGCCGCCATAGGGAACTCTGGGATACTGGAGGTTCAGGGGCCGGAGGGTCTAGGGTCCGTCCTTTCGGGACTGTtccag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU62807 True 4402 lncRNA 0.42 1 5586800 5591201

Neighbor

gene id symbol gene type direction distance location
AMCG00008594 NA coding upstream 477996 5094364 ~ 5108804 (+)
AMCG00008593 LOC107093428 coding upstream 531044 5042754 ~ 5055756 (+)
AMCG00008590 NA coding upstream 682727 4899445 ~ 4904073 (+)
AMCG00008587 NA coding upstream 751144 4824127 ~ 4835656 (+)
AMCG00008588 NA coding upstream 773893 4800454 ~ 4812907 (+)
AMCG00008601 NA coding downstream 23718 5614919 ~ 5635748 (+)
AMCG00008606 NA coding downstream 153603 5744804 ~ 5757635 (+)
AMCG00008605 NA coding downstream 175563 5766764 ~ 5776682 (+)
AMCG00008607 NA coding downstream 253144 5844345 ~ 5847681 (+)
AMCG00008604 NA coding downstream 290792 5881993 ~ 5883048 (+)
G50206 NA non-coding upstream 6778 5579222 ~ 5580022 (+)
G50196 NA non-coding upstream 26191 5560021 ~ 5560609 (+)
G50185 NA non-coding upstream 163755 5422823 ~ 5423045 (+)
G50181 NA non-coding upstream 431316 5149895 ~ 5155484 (+)
G50180 NA non-coding upstream 436943 5149468 ~ 5149857 (+)
G50213 NA non-coding downstream 1235 5592436 ~ 5592931 (+)
G50214 NA non-coding downstream 3511 5594712 ~ 5595052 (+)
G50255 NA non-coding downstream 350006 5941207 ~ 5941527 (+)
G50336 LOC104962440 non-coding downstream 751493 6342694 ~ 6342978 (+)
G50340 NA non-coding downstream 781231 6372432 ~ 6372911 (+)
AMCG00008580 pnpla6,LOC106564686 other upstream 1013926 4561991 ~ 4572874 (+)
G49982 NA other upstream 1421317 4162058 ~ 4165483 (+)
G49980 NA other upstream 1426738 4156088 ~ 4160062 (+)
AMCG00008526 NA other upstream 1701196 3429897 ~ 3885604 (+)
G49583 smarca4,LOC102779508 other upstream 2697904 2886766 ~ 2888896 (+)
G50215 NA other downstream 4822 5596023 ~ 5596799 (+)
G50243 NA other downstream 147340 5738541 ~ 5742750 (+)
G50448 NA other downstream 1366410 6957611 ~ 7018125 (+)
AMCG00008639 NA other downstream 1705685 7296886 ~ 7315850 (+)
G50583 NA other downstream 2342628 7933829 ~ 7939771 (+)

Expression


Co-expression Network