G50215


Basic Information

Item Value
gene id G50215
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 5596023 ~ 5596799 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU62810
AGAGTGGGGGGATTGCCACAGCACCCAGGCAGCAGACCCGATGGCGGCTGATGCTGGGGTCTCGTGAGAACACCACCAGCTTGAGCAACTGGGCGCGCTCCAGCTCCAGGTTAAAAGTGTGGTCCAGGCTGAGGAAGGGGCCCCTGCAGGTGAGCAAGGCGGTGCGGGCACGGGTCACTCCGTCCACCTGAATGGCGCAGAACACCTCCTTGGAGTCCACTCGGGGGGACttcacctcctccaagcgaaACAGGTGGACGCTCATGAGTCCAGACAGCCTCTGGGCACACCTGGGCTGTTCAGCAAGACTGTAGGGCCGAAAGGAGGATGGATCGGGGACTCCGGCTGCCTCTTTGGGATCGTGTTTGGCAATCAGCTCTGGGGAATCGCCGTCGCTCAGGTAGCCCCCCTTGCTGGCCGACTTCCCCCTCCTGGAGGAGCGTCTTGGGGGCCGCTCCTCGGGGGCCGACACGCTGGAGTCCAGGTGGTAACGGCTGATGACGTTGCCCGACTCCTTGCGGGCGTTGGGCGGGGACGTGCCGTCGCCAGGGGCCTGGCCCCGGCGCTGGTTGCGGGAGGAGCGCAGGCTGAGCTTGCGCCGCAGCTCGGGCAACTTGCGCATCTTCATGGAGAGGCGGCGCACAGTACCCGGCGACTTGATGCGATCCATCACCCCAGCTTTCTTCTGCGAGCCAGGGGAGCTGTCCGCTGCCACCACCGCTGCCCCGGCCCCACCCGCCACTTGCTGCTCCAATGGGTCTGCCTGCTGGATTGCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU62810 True 777 TUCP 0.66 1 5596023 5596799

Neighbor

gene id symbol gene type direction distance location
AMCG00008594 NA coding upstream 487219 5094364 ~ 5108804 (+)
AMCG00008593 LOC107093428 coding upstream 540267 5042754 ~ 5055756 (+)
AMCG00008590 NA coding upstream 691950 4899445 ~ 4904073 (+)
AMCG00008587 NA coding upstream 760367 4824127 ~ 4835656 (+)
AMCG00008588 NA coding upstream 783116 4800454 ~ 4812907 (+)
AMCG00008601 NA coding downstream 18120 5614919 ~ 5635748 (+)
AMCG00008606 NA coding downstream 148005 5744804 ~ 5757635 (+)
AMCG00008605 NA coding downstream 169965 5766764 ~ 5776682 (+)
AMCG00008607 NA coding downstream 247546 5844345 ~ 5847681 (+)
AMCG00008604 NA coding downstream 285194 5881993 ~ 5883048 (+)
G50214 NA non-coding upstream 971 5594712 ~ 5595052 (+)
G50213 NA non-coding upstream 3092 5592436 ~ 5592931 (+)
G50212 NA non-coding upstream 4822 5586800 ~ 5591201 (+)
G50206 NA non-coding upstream 16001 5579222 ~ 5580022 (+)
G50196 NA non-coding upstream 35414 5560021 ~ 5560609 (+)
G50255 NA non-coding downstream 344408 5941207 ~ 5941527 (+)
G50336 LOC104962440 non-coding downstream 745895 6342694 ~ 6342978 (+)
G50340 NA non-coding downstream 775633 6372432 ~ 6372911 (+)
G50342 NA non-coding downstream 777866 6374665 ~ 6375034 (+)
G50346 NA non-coding downstream 893858 6490657 ~ 6518591 (+)
AMCG00008580 pnpla6,LOC106564686 other upstream 1023149 4561991 ~ 4572874 (+)
G49982 NA other upstream 1430540 4162058 ~ 4165483 (+)
G49980 NA other upstream 1435961 4156088 ~ 4160062 (+)
AMCG00008526 NA other upstream 1710419 3429897 ~ 3885604 (+)
G49583 smarca4,LOC102779508 other upstream 2707127 2886766 ~ 2888896 (+)
G50243 NA other downstream 141742 5738541 ~ 5742750 (+)
G50448 NA other downstream 1360812 6957611 ~ 7018125 (+)
AMCG00008639 NA other downstream 1700087 7296886 ~ 7315850 (+)
G50583 NA other downstream 2337030 7933829 ~ 7939771 (+)
AMCG00008664 Tuba1a,LOC107714908,LOC108433351,LOC103385219,LOC108255233,LOC108275946,LOC105930792 other downstream 2682054 8278853 ~ 8324778 (+)

Expression


Co-expression Network