G50361


Basic Information

Item Value
gene id G50361
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 6626109 ~ 6627025 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU62977
aaagttatcagatttccttagctcatcagcttggaactggtttgcatcaaagtgacagttttggggaggatggcaccgagaagaggccaaatagtttggaattctgctatgagatgtctggagaaaggggcctgtaggtgataaaaactctttgaagtggatgagagccgaaatcccgacatagagctatgaacccaggccaaccggcatttccaaaagatggcatggattgacatcagtcataaatcaagcccccctccaataggacactgggggctgaaaccgaaatccaatctcaagaactcagggaccaatcacctattgatctgacagactataaggaACGCGGACAGTCTTTCtggctctctctcacctgaaccagaaactcgctgccacagctcaacctgtagctctgttgccagaaccggaaccagaaaccaaccaagtctttgccggcaacagaagagttaaactgggagaaggagattgagccgtacgaagaattcttttaaaggactttattaaataaagaactttacagactgcgcatgcccgcctgtgcccacctgatcagtggagttttacagctggacaattgactaagtcgactgtatacgaaagtgtcagtcatttaaatagctatttgagtcttaa
>TU62980
aaagttatcagatttccttagctcatcagcttggaactggtttgcatcaaagtgacagttttggggaggatggcaccgagaagaggccaaatagtttggaattctgctatgagatgtctggagaaaggggcctgtaggtgataaaaactctttgaagtggatgagagccgaaatcccgacatagagctatgaacccaggccaaccggcatttccaaaagatggcatggattgacatcagtcataaatcaagcccccctccaataggacactgggggctgaaaccgaaatccaatctcaagaactcagggaccaatcacctattgatctgacagactataaggaACGCGGACAGTCTTTCtggctctctctcacctgaaccagaaactcgctgccacagctcaacctgtagctctgttgccagaaccggaaccagaaaccaaccaagtctttgccggcaacagaagagttaaactgggagaaggagattgagccgtacgaagaattcttttaaaggactttattaaataaagaactttacagactgcgcatgcccgcctgtgcccacctgatcagtggagttttacagctggacaattgactaagtcgactgtatacgaaagtgtcagtcatttaaatagctatttgagtcttaaaaaacttgacccttggaacgaggtctttcctcaaagacttcaAATAAGGACGGTGAGAGaccctgcttgccaagaagattttgtgcacaaccttggagccttcaaaccagtggaacaTCTGTTTGGAAAcgactctactttcgcgaaaccccaacttccaggtgcatcgactgagtggaagttttTGGACAAAGCTGAACCGGACTGcttttgttccaaaccacacggacctcatgccgtgtgctgttatctgagcccgaaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU62977 False 654 lncRNA 0.46 1 6626372 6627025
TU62980 True 917 lncRNA 0.46 1 6626109 6627025

Neighbor

gene id symbol gene type direction distance location
AMCG00008625 NA coding downstream 25848 6591233 ~ 6600261 (-)
AMCG00008621 NA coding downstream 69810 6520531 ~ 6556299 (-)
AMCG00008622 NA coding downstream 155376 6415940 ~ 6470733 (-)
AMCG00008620 NA coding downstream 229087 6391144 ~ 6397022 (-)
AMCG00008613 NA coding downstream 249453 6373524 ~ 6376656 (-)
AMCG00008624 gipc1,LOC103468782,LOC102231162,LOC107711205,LOC106606841 coding upstream 24399 6651424 ~ 6659244 (-)
AMCG00008623 NA coding upstream 39838 6666863 ~ 6674622 (-)
AMCG00008628 ndufb7,ndub7,LOC106591659 coding upstream 89084 6716109 ~ 6719084 (-)
AMCG00008627 LOC108442223,LOC107594236,LOC107703743,LOC103374416,LOC100702196 coding upstream 93557 6720582 ~ 6742229 (-)
AMCG00008631 LOC107580959 coding upstream 171738 6798763 ~ 6804508 (-)
G50337 LOC104962440 non-coding downstream 283145 6342676 ~ 6342964 (-)
G50268 NA non-coding downstream 684582 5941195 ~ 5941527 (-)
G50126 NA non-coding downstream 1796488 4820240 ~ 4829621 (-)
G50020 NA non-coding downstream 2304221 4318783 ~ 4321888 (-)
G49984 NA non-coding downstream 2462459 4162175 ~ 4163650 (-)
G50372 NA non-coding upstream 19986 6647011 ~ 6651343 (-)
G50381 tecr,LOC107703756,LOC107573605,LOC107594239,LOC107390378 non-coding upstream 65781 6692806 ~ 6706289 (-)
G50435 NA non-coding upstream 277052 6904077 ~ 6904389 (-)
G50437 NA non-coding upstream 278315 6905340 ~ 6905577 (-)
G50496 NA non-coding upstream 739600 7366625 ~ 7366930 (-)
G50267 LOC107575789 other downstream 740659 5748890 ~ 5885450 (-)
AMCG00008608 NA other downstream 832114 5786620 ~ 5793995 (-)
AMCG00008609 NA other downstream 839781 5655689 ~ 5786328 (-)
AMCG00008602 NA other downstream 1015780 5587075 ~ 5610329 (-)
AMCG00008554 NA other downstream 2754840 3430814 ~ 3871269 (-)
AMCG00008633 prkaca,LOC108429687 other upstream 212052 6839077 ~ 6885687 (-)
AMCG00008634 NA other upstream 293682 6920707 ~ 6933089 (-)
G50476 NA other upstream 320864 6947889 ~ 7151472 (-)
G50602 NA other upstream 1274310 7901335 ~ 7902606 (-)
G50656 NA other upstream 1507556 8134581 ~ 8135414 (-)

Expression


Co-expression Network