G50367


Basic Information

Item Value
gene id G50367
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 6646950 ~ 6651339 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU62986
AGAAACTTCAGTAACTACAAGTACACTGTCAGACATCCTGCAAGTCGTACAACTTTTGTCTTGTAATATCTACCGCAAATTGCTGATTTCCACCTTTTCAGTTGACttgctgtaaaaaaacaatctcacatttatcacttttttccagGGGAATATCaggacaaacaaaaacacaaacaacatctTGGCATATGTTTTTACTGGAGGAGGTTTTCTAATAGCAGTCAATGAAAGCCCTTTATTTCTGGTAATGTTGGTCATTTCTTGACTTTCGAGTGAGGTCTAAAAGTATATTAGGCCTACaagttgtgtaaaataaattatacacatcAGTGCATGGAATCACATGTGCATATGCATATTGTTGAGTGCATTAGctgaatgaaatgcattgctTAGTTTTGACTATGGGCCTAGCgatgtttcttttaatgcatcaatttattattgtaccatTTATACTAAtcttaattcaattttattttttgaattagTCAAGGAGCAATTTGTtgatttctatttctattcctATAACCAGGGAGGCCACAGGGACATCTAGGACATAGCAGTTGAACTATAATtggggggcaaaaaaaaaaaaaaaaatgcagggaCCTATTTTTAACTGGGATATGGTACAGCGAAAATATAAGTAATTTCAAGAACACTTGTGACcttttaaagctgttttatGGTGAAATTTAATGGAGGTATTACAACTGTTCACTATTTGTTCTATATAACATAACActgacataaaatacattttgatagtACTAATCCATACTCCCTTTCCCTCTATAGTTCTGGTCAATATCTTCAGGTCCATTCCTTACACTACAGCAGCACCTAGCATAGCTTTCAAATTGTAGTGAGGAAATACAATTGACCTCAAATATACCAGTTGTTTAAGATCAGGAAAAgggattcattttaatatgaatacttcAAATGCCTactgcatacaaaaatacacattgcaacaatttttttttaaaacaataacagtagTACTTAttcaaagaatgaaaaataaatgaaatgctgGATCATGAAATCCAAATTCTGCCACACCTCTTTAACTTCATCTGGAGTTAAAATAACaagtataaaagtgtaaattTGACACAAGAAAATGTGATGTGAAGAATATAGGATTTCAAGTAAACCACATTTCAAAGATTAGATTTTAAACCCAACAACAATACTCAGAAAGGAAACAGTTAAAAATTCAGTCTTCAGCATTTAGACAGCATGTGCTTTTCAATTCCTTAAATTACTCTTGTATGAATGTATACTGTATTAGAATATAACTGTTGCAGAAtgctctttaaaaataacaatttaaaaacattcaacagtATACAAGTACATTACTCTCCTAGACCCTACTTTcgttaatgttattaaaaaacattttccaatacCAATCCTTTGCAAGTACTCTGGCTACATGCTTTAGTGTATGCCACCATCACTTTCACAATTACTGATCGGGTTGCAGAATGTTGCTGGTCTCCTTTTAAAcgtgtttttctagcccataaaAAGGTTAGATTTCTCCAACAGAATGGAGGCAACAACCATATTGTATCTATACTACCCATCAAACGAAGactagatttattttcatgagtACATTACTTTCAGCAAAAATTGATTGTGTCATTTTATCCTGTTTGTTGAGGAATGCAATTCTAAGTTTCCATATAATGATCGAGATCGAGAATTTATTGACTATTGAAATTGTAGCATTTCAATCAAATTCATGTTCCTAAATCGGATTTAGCCTATTTGGTTTAGACACAAGTTCCTTTTAACATCAATCCAAAGACGTTGATTATTGaaactgtggaaaataatgaaaaagtagTCTCTCCCCCTGCATGTATGTGCCCATTATTGAGTTTTTTCTACTCTAAAATAGAGAGTACTGTTAGTGTCCTTTACTGTTAACCTAGAGGGAAAGCAGGTCCAATAGCAGCAGCAATTATAATTTGGCACTCATGCATACATCACGATTGTCAATTTCAACCACAGAGAGCCTAAAATCAACCCAGATCTTTACAATTGCTTTTTGActtaagaaagaagaaaaatctaccaatcataaaaaaaaacaataccagcCTGCAGCTTCTACATAACATGATCTCAATACAGGTATTTACAGATGTTTATTGGGTAGCAATTCAAGTGTTAGTTTATTCCCAGTTCTCACAAAATGCAGGAATGATGTGCAAGtgttaaattaactttttttcttttctttacaattttacacattacacaagGATTGATATGGTAAAACTACTTAAACCAAAACCAATTACTACAAATGTGAAGGATAACTAGACAAGTCAAAATAACTaacaatatttaagttttttctCCCTGATTAGgccttttatgcattttttacactttaatgcatttccttcaGTATTACCATTTTATAAATTTATTACAACTAAAAAGATGAGTCTAGTATTGTAGGAAAAAATCTGAAACCATTTTCAACCCCTTCATCCACTTCCATTATCATGATAATCCAGTGCTCAAAAATAAAGGATAAACTCCACTTCCCAGTCATGTCTGAAGGTATGAAAGCTATGAAAGCATAAGAAAgcataagcaaaaaaaaaaaaatagaatgacACATGGAAACAACCATAAACAAGGGTTTGAAAATGCTACAGACATGACAATCCATatgaaaacacttttctttctGCTGAAGGACATACACAAGTCTGCAAGTGTAATTTTGTTAAATTTACTGGTGGTCAATTCTGGTACTGCAGGTTTGCCTTAGATATTAAAGGCTAAAATATGGTGAAGCCATTAGTTTAATGAATAAGCTGAGCACACACAAggcattaaaatcaatattagaACATAGGACGCTTACTGAGCAGAGGTAATTAATATTGTGAAGTTCGGGATGTTGAAATTCTCATAAAAATACCACTTAGGGAGCACTGTGAAGACAAAAGTGGGGATGGACTTTGTTCTTTGTTCTCAAGGCACTTGACTGACCAGCCAATCAGGTACCATTTCAATCATCTGCATGACCCACCAACTCCCTTTCTTCCCAAGCCTTCAAAAACAATCGACCTCATAAAGAGAACTGGACACTCTTTTGAACTACAGATCTCATTATCCAtcagtggtttaattaaagATCTCCAAGGCAAGTGCCACAAGGTTTATGGTTTAATGGGAGCAATTTATCCCTCCTTCTGAGGTTTGAAGCAGACTATTTAGAGAGGCTTTGAAAACCTGTTGGACTTGAGGAACTTCACAGCTTCGATGGAGAACAGAAACAGGACCAAAGGCATAGATTTACCACTACCTTTACACATTTGGTCCATGATATTTATACACCTGCACAAACTGTAAACTGAAacgaagaaaaacaaaaatccctaGCAGGGATAAAAAGTGTCAGTTCATTCAGAAGACAGAACAGAATATATTAATAGATAATTATGCATGCAAGATGGACATTTCAGcactgtaatgcagtttaaGTCAGTGGTTCAAAGAAACGGCACCAACACAACATGTAAAATTAAGCTGTACTCTAAGCAAAATGTCACTGTGCTCTTAAGTGTAACAGTCACTAAGGTTTGTACATAATAtaccaaacacaataataatttaaattactttagaggtttttcttttttttaaatgattaactaaatttctgaaattgtaatgtttctttagtttttcaaaatcctaacatttgagaatttaaaaacaaaaatacaaaaatattttggacGTAATCTCTTTCAAAAAAGAGTCTGACTTAAAATGTCGGAGACCAAGTAAAAGCTTAAGATAAAATGACACCTTGTTAATTTGAGTAGGCCCTCACATTGTGATGTGGGGATTTAAGTCTTCATACGaaatctgaattatttaattcGGGTTTTGGTAATTTTTTCAGCAAAACTATAAAGTTTCATACAAACCTCTCcccaagtaaaaaaatatataataaagcagCTGTTTTGTAAGTAAGGACTAGACTTATGAGGTAATGGTTATATTCACTTTGTtatatgattaaaaatgttttactgttattGCCTGTAAGAACAGTATTGTTTGCGTtttgtttacacagtgttttaCTCCTTATTtcgaaaataaaatgaaactcgCTATGTATTAATAGTACATCTTTTAGAACACCATTACCTTTTAACAGAAATGCTACAAAAGGATATCAAATActttgcaatgttttgttttgtaaatcttATTTTCAGACAATTATTAGACTTATTCAGTTTCAGATTAACATCCTTAACCAATATTGAAACTAGAAAAACTAAATGGattgggggaagaaaaataaaaaaatcttacatTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU62986 True 4390 lncRNA 0.33 1 6646950 6651339

Neighbor

gene id symbol gene type direction distance location
AMCG00008619 NA coding upstream 283920 6305726 ~ 6363030 (+)
AMCG00008618 NA coding upstream 439199 6188494 ~ 6207751 (+)
AMCG00008617 NA coding upstream 527598 6108963 ~ 6119352 (+)
AMCG00008616 NA coding upstream 601080 6030847 ~ 6045870 (+)
AMCG00008604 NA coding upstream 763902 5881993 ~ 5883048 (+)
AMCG00008626 tecr,LOC107573605,LOC107703756,LOC107694603 coding downstream 41406 6692745 ~ 6719091 (+)
AMCG00008629 NA coding downstream 96372 6747711 ~ 6748885 (+)
AMCG00008641 NA coding downstream 702926 7354265 ~ 7354886 (+)
AMCG00008640 NA coding downstream 720689 7372028 ~ 7376143 (+)
AMCG00008645 gdf11 coding downstream 764460 7415799 ~ 7416230 (+)
G50362 NA non-coding upstream 17304 6629438 ~ 6629646 (+)
G50346 NA non-coding upstream 128359 6490657 ~ 6518591 (+)
G50342 NA non-coding upstream 271916 6374665 ~ 6375034 (+)
G50340 NA non-coding upstream 274039 6372432 ~ 6372911 (+)
G50336 LOC104962440 non-coding upstream 303972 6342694 ~ 6342978 (+)
G50450 NA non-coding downstream 371122 7022461 ~ 7166940 (+)
G50451 NA non-coding downstream 389582 7040921 ~ 7050362 (+)
G50458 NA non-coding downstream 561407 7212746 ~ 7219181 (+)
G50459 NA non-coding downstream 569401 7220740 ~ 7222856 (+)
G50461 NA non-coding downstream 582081 7233420 ~ 7248042 (+)
G50243 NA other upstream 904200 5738541 ~ 5742750 (+)
G50215 NA other upstream 1050151 5596023 ~ 5596799 (+)
AMCG00008580 pnpla6,LOC106564686 other upstream 2074076 4561991 ~ 4572874 (+)
G49982 NA other upstream 2481467 4162058 ~ 4165483 (+)
G49980 NA other upstream 2486888 4156088 ~ 4160062 (+)
G50448 NA other downstream 306272 6957611 ~ 7018125 (+)
AMCG00008639 NA other downstream 645547 7296886 ~ 7315850 (+)
G50583 NA other downstream 1282490 7933829 ~ 7939771 (+)
AMCG00008664 Tuba1a,LOC107714908,LOC108433351,LOC103385219,LOC108255233,LOC108275946,LOC105930792 other downstream 1627514 8278853 ~ 8324778 (+)
G50747 NA other downstream 1798827 8450166 ~ 8666548 (+)

Expression


Co-expression Network