G50381 (tecr,LOC107703756,LOC107573605,LOC107594239,LOC107390378)


Basic Information

Item Value
gene id G50381
gene name tecr,LOC107703756,LOC107573605,LOC107594239,LOC107390378
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 6692806 ~ 6706289 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU63004
GTCCAGCGTACTCGGTCAGGAACACCGTTACCCAGCTGATCTGGGCACCAAGATCCCTGAAATAAAGAGTTGCAGTGGTCCCCACGGGGAGGTTCTGTAAGATGTCTTCATCCTTCAGAGACTTGCCTTTGGGATCAAGTCTAATGGACTGTCGAGCTGGATACCACTGGGGATGGGATTTATGAAACATTCCCTTTATTTCCCCAATGGTTGCATTGGGCTCGACCTTGTCCAGGAAACATAGCTTATCCTTGGTCTTGGCATCCAAGATCTCCACctcaaaaaaaacaacagctttttTAGTCTTTTTGGCTGGCTTGGCTGGGCGTTTAGCAGGCACGACTGCTGGTGATCCATTGGCCTTCTTCGGTGCCTGAGCTTCTAACGCTATTGAATTTATATCCATTATTCACAACTTTTGGGGTGGTCTGTCGTCTGAACTGATTCTTGCACTGCAATGAGAAACTCTCACCACAGCAGTTTTTGCAGGTGCTAAAATGAAACCCTAGCTTTACTTAACACGAAATTCCCATTGGTTACCGTTTCAGCAAAATAAgatacaaaaacaatcaaacaagaaCAGTACTCTATTTCCACAGGCTCTGGTTGCGACAGTTCAAGGCTAGGGTTTCaacccataaaaaaaaagaaaataaacaggtgGGGCAAAAAAGGCTAAAGGGGTGGGTTTTAGTGCCACTTAATCCAAGCACAAGTTACTGAAGGAAAACTGag

Function

symbol description
tecr Enables very-long-chain enoyl-CoA reductase activity. Involved in fatty acid elongation; sphingolipid metabolic process; and very long-chain fatty acid biosynthetic process. Located in endoplasmic reticulum. Is integral component of endoplasmic reticulum membrane. Implicated in autosomal recessive non-syndromic intellectual disability.

NR:

description
PREDICTED: very-long-chain enoyl-CoA reductase-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63004 True 735 lncRNA 0.45 5 6692806 6706289

Neighbor

gene id symbol gene type direction distance location
AMCG00008623 NA coding downstream 18184 6666863 ~ 6674622 (-)
AMCG00008624 gipc1,LOC103468782,LOC102231162,LOC107711205,LOC106606841 coding downstream 33562 6651424 ~ 6659244 (-)
AMCG00008625 NA coding downstream 92545 6591233 ~ 6600261 (-)
AMCG00008621 NA coding downstream 136507 6520531 ~ 6556299 (-)
AMCG00008622 NA coding downstream 222073 6415940 ~ 6470733 (-)
AMCG00008628 ndufb7,ndub7,LOC106591659 coding upstream 9820 6716109 ~ 6719084 (-)
AMCG00008627 LOC108442223,LOC107594236,LOC107703743,LOC103374416,LOC100702196 coding upstream 14293 6720582 ~ 6742229 (-)
AMCG00008631 LOC107580959 coding upstream 92474 6798763 ~ 6804508 (-)
AMCG00008630 samd1,LOC108442215,LOC100700176 coding upstream 113675 6819964 ~ 6829699 (-)
AMCG00008632 asf1b,asf1bb,LOC103026007,LOC107599302,LOC108429686,LOC101069596 coding upstream 202485 6908774 ~ 6915444 (-)
G50372 NA non-coding downstream 41463 6647011 ~ 6651343 (-)
G50361 NA non-coding downstream 65781 6626109 ~ 6627025 (-)
G50337 LOC104962440 non-coding downstream 349842 6342676 ~ 6342964 (-)
G50268 NA non-coding downstream 751279 5941195 ~ 5941527 (-)
G50126 NA non-coding downstream 1863185 4820240 ~ 4829621 (-)
G50435 NA non-coding upstream 197788 6904077 ~ 6904389 (-)
G50437 NA non-coding upstream 199051 6905340 ~ 6905577 (-)
G50496 NA non-coding upstream 660336 7366625 ~ 7366930 (-)
G50514 NA non-coding upstream 672749 7379038 ~ 7379487 (-)
G50557 NA non-coding upstream 947791 7654080 ~ 7657391 (-)
G50267 LOC107575789 other downstream 807356 5748890 ~ 5885450 (-)
AMCG00008608 NA other downstream 898811 5786620 ~ 5793995 (-)
AMCG00008609 NA other downstream 906478 5655689 ~ 5786328 (-)
AMCG00008602 NA other downstream 1082477 5587075 ~ 5610329 (-)
AMCG00008554 NA other downstream 2821537 3430814 ~ 3871269 (-)
AMCG00008633 prkaca,LOC108429687 other upstream 132788 6839077 ~ 6885687 (-)
AMCG00008634 NA other upstream 214418 6920707 ~ 6933089 (-)
G50476 NA other upstream 241600 6947889 ~ 7151472 (-)
G50602 NA other upstream 1195046 7901335 ~ 7902606 (-)
G50656 NA other upstream 1428292 8134581 ~ 8135414 (-)

Expression


Co-expression Network