G50435


Basic Information

Item Value
gene id G50435
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 6904077 ~ 6904389 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU63077
cttGCCACAatgcaaaaatggttcaggaatagtttgaggaacacaacaacgagttcagggtgttgacttggcctccaagttcccagatctcaatccaatcgagcatctgtgggatgtactggacaaacaagtccgatccatggaggccccacctggcaacttacaggacttaaaggatctgctgctaacgtcttggtgccagataccatagcacaccttcagaggtctagtggagtccatgactcgacgggtcagggctgttttggcagcaaaagggggacctacacaatattaggcaggtggtcataatgtt

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU63077 True 313 lncRNA 0.49 1 6904077 6904389

Neighbor

gene id symbol gene type direction distance location
AMCG00008630 samd1,LOC108442215,LOC100700176 coding downstream 74378 6819964 ~ 6829699 (-)
AMCG00008631 LOC107580959 coding downstream 99569 6798763 ~ 6804508 (-)
AMCG00008627 LOC108442223,LOC107594236,LOC107703743,LOC103374416,LOC100702196 coding downstream 161848 6720582 ~ 6742229 (-)
AMCG00008628 ndufb7,ndub7,LOC106591659 coding downstream 184993 6716109 ~ 6719084 (-)
AMCG00008623 NA coding downstream 229455 6666863 ~ 6674622 (-)
AMCG00008632 asf1b,asf1bb,LOC103026007,LOC107599302,LOC108429686,LOC101069596 coding upstream 4385 6908774 ~ 6915444 (-)
AMCG00008635 NA coding upstream 95165 6999554 ~ 7009561 (-)
AMCG00008636 NA coding upstream 309280 7213669 ~ 7276093 (-)
AMCG00008637 NA coding upstream 411737 7316126 ~ 7337849 (-)
AMCG00008638 tubb4b,tubb2b,LOC107587400,LOC107393497,LOC104942712,LOC103024068,LOC107717448 coding upstream 437045 7341434 ~ 7342284 (-)
G50381 tecr,LOC107703756,LOC107573605,LOC107594239,LOC107390378 non-coding downstream 197788 6692806 ~ 6706289 (-)
G50372 NA non-coding downstream 252734 6647011 ~ 6651343 (-)
G50361 NA non-coding downstream 277052 6626109 ~ 6627025 (-)
G50337 LOC104962440 non-coding downstream 561113 6342676 ~ 6342964 (-)
G50268 NA non-coding downstream 962550 5941195 ~ 5941527 (-)
G50437 NA non-coding upstream 951 6905340 ~ 6905577 (-)
G50496 NA non-coding upstream 462236 7366625 ~ 7366930 (-)
G50514 NA non-coding upstream 474649 7379038 ~ 7379487 (-)
G50557 NA non-coding upstream 749691 7654080 ~ 7657391 (-)
G50558 NA non-coding upstream 757763 7662152 ~ 7662442 (-)
AMCG00008633 prkaca,LOC108429687 other downstream 18390 6839077 ~ 6885687 (-)
G50267 LOC107575789 other downstream 1018627 5748890 ~ 5885450 (-)
AMCG00008608 NA other downstream 1110082 5786620 ~ 5793995 (-)
AMCG00008609 NA other downstream 1117749 5655689 ~ 5786328 (-)
AMCG00008602 NA other downstream 1293748 5587075 ~ 5610329 (-)
AMCG00008634 NA other upstream 16318 6920707 ~ 6933089 (-)
G50476 NA other upstream 43500 6947889 ~ 7151472 (-)
G50602 NA other upstream 996946 7901335 ~ 7902606 (-)
G50656 NA other upstream 1230192 8134581 ~ 8135414 (-)
AMCG00008662 NA other upstream 1278540 8182929 ~ 8190177 (-)

Expression


Co-expression Network