G50450


Basic Information

Item Value
gene id G50450
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 7022461 ~ 7166940 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU63093
AGAAAGCTGCTGATCGTTTAAGCACCTTTTTGAATGTGATTGCTGTTTCAAATAAGTCCGCTGGGCAGAAGTCAGAATTAGGGGGACTTTACCTGCATGCTGTTGAGGACGTGCTGTTGGCTCTGCCTGGGAGCTCTGAGAAGCTGGTGAAGAGAAATCAGAGTGCAGACAACCTAGatctGCAGTGGTTGCAGATACCCCCCAATTATACTGTGGAACACAACATTGAATCTCTACAGACAAGTGGAAATACTCTGGACATAAATCTCACCAGCATTGTGAAGGACAACCCACAAGgGGGAACAACAGTTGGATTTGCCTCTTACACTGGTTTGGAATCTGTGTTAAGTGCAAAATTCCTTCAGAACTCTCAAAACAATGCATCTCCCCGAATGAACTCACAGATAGTAACTGTGGTCATCGGCCAAAAGAAGAATCAGAACCTTTCTCAGCCTATTAATATAACTTTCCAGCACAATCAGGTAAGTTGAACTGCGGAAAACCATGGTCATGTAGGCTTTATGGGTATTTTAGCAGAGCTGCTAGCTTAGTGCTAGCGAAATGAGCTGGTatgacaagaaaaaacacaagaaagctttatgaaaaaacaacagcacagccAATACAAAGAGCTTCATATTAATATATGCAATGCagtggggagtgggggggatGACTCTTTGAATAGGCATGATCTTGGGGGCCAACACAAAAAAGTTAGGGATATAGTACAATCAGAATTAACATCCTACATCGGAA

Function

GO:

id name namespace
GO:0065007 biological regulation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63093 True 759 lncRNA 0.43 3 7022461 7166940

Neighbor

gene id symbol gene type direction distance location
AMCG00008629 NA coding upstream 273576 6747711 ~ 6748885 (+)
AMCG00008626 tecr,LOC107573605,LOC107703756,LOC107694603 coding upstream 303370 6692745 ~ 6719091 (+)
AMCG00008619 NA coding upstream 659431 6305726 ~ 6363030 (+)
AMCG00008618 NA coding upstream 814710 6188494 ~ 6207751 (+)
AMCG00008617 NA coding upstream 903109 6108963 ~ 6119352 (+)
AMCG00008641 NA coding downstream 187325 7354265 ~ 7354886 (+)
AMCG00008640 NA coding downstream 205088 7372028 ~ 7376143 (+)
AMCG00008645 gdf11 coding downstream 248859 7415799 ~ 7416230 (+)
AMCG00008643 gdf11,LOC108254821,LOC106513268,LOC107562248,LOC107573429,LOC107683628,LOC107385665 coding downstream 320230 7487170 ~ 7496005 (+)
AMCG00008644 NA coding downstream 376780 7543720 ~ 7552782 (+)
G50367 NA non-coding upstream 371122 6646950 ~ 6651339 (+)
G50362 NA non-coding upstream 392815 6629438 ~ 6629646 (+)
G50346 NA non-coding upstream 503870 6490657 ~ 6518591 (+)
G50342 NA non-coding upstream 647427 6374665 ~ 6375034 (+)
G50340 NA non-coding upstream 649550 6372432 ~ 6372911 (+)
G50458 NA non-coding downstream 45806 7212746 ~ 7219181 (+)
G50459 NA non-coding downstream 53800 7220740 ~ 7222856 (+)
G50461 NA non-coding downstream 66480 7233420 ~ 7248042 (+)
G50506 NA non-coding downstream 212108 7379048 ~ 7379506 (+)
G50534 NA non-coding downstream 366034 7532974 ~ 7542850 (+)
G50448 NA other upstream 4336 6957611 ~ 7018125 (+)
G50243 NA other upstream 1279711 5738541 ~ 5742750 (+)
G50215 NA other upstream 1425662 5596023 ~ 5596799 (+)
AMCG00008580 pnpla6,LOC106564686 other upstream 2449587 4561991 ~ 4572874 (+)
G49982 NA other upstream 2856978 4162058 ~ 4165483 (+)
AMCG00008639 NA other downstream 129946 7296886 ~ 7315850 (+)
G50583 NA other downstream 766889 7933829 ~ 7939771 (+)
AMCG00008664 Tuba1a,LOC107714908,LOC108433351,LOC103385219,LOC108255233,LOC108275946,LOC105930792 other downstream 1111913 8278853 ~ 8324778 (+)
G50747 NA other downstream 1283226 8450166 ~ 8666548 (+)
G50900 rnf41,LOC107701697,LOC107756409,LOC107723732,LOC107671855 other downstream 1914887 9081827 ~ 9087967 (+)

Expression


Co-expression Network