G50459


Basic Information

Item Value
gene id G50459
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 7220740 ~ 7222856 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU63103
tgaaattaaagcatagaacaaataaacagttggagataaaaataaatcatggaatcgttttgtttaacaaaatgtaacaccttaagctgacaaacccctctggtacccttaaaaggtgtgtgcttctctttaatcccacatgtactcttcactgttgtgttgtttaccaagtgtttggtatcccatgaaagcggagactctcagctttctaatgatctGGAGCATTTTCTgatgtaaacatttgtttttatacccccccgcccccaatcTGAAATGGAGGGTGGGGcaatacttggtctgagtaggaatacaaaatctcagaaaatattgtcaattatgacatattctggaaccagacagtctactgatgaaaacaagaccatccatgttttggtagaagaaacacaaacctatagaaagctcaaaatgtcaaaatggaaaactctgtttacagtgtactaatattattattattattattattattattattattattattattattatttattggcagatgcccttatccagggcaacttacaatataagtgcaaaacaaagtgcaaaaatacagttcaataaaggcatcaatcattaaaattcaatttacataaaacatagcaattcaaaatataatacattttaccacttctaatttacaatttacacaggcaagtaccataagtgaggtcctacatcctggacggtaaaaactaagtgctgtcaagatgtagggtcacagtcaggggctaccggaaagggagcaaggaggaaacaaattaaaaatgcaagaagtataataacaatctgtgaagtgctatctgacgggggttaaaaggactaatattgtatcTCGGTGATAGAGATGCAACCATGACTATACTTGACATCACAATGCTAACTGGATTTGTTCCCGATATGCAGGACCTTAAAAGGTTATCTGGTGGAGTGGACCAATATATTCAGAAGTATGAGATGGACAAAGAACTGTCTCCAAAAGGGTCTCTGATAATTTACCTAGACAAGGTATATGCATTATGTTaccattttcatatatttgttaaattgtCTAAATGTTCAAATCAAAATGATAACTGAGTCTAAAGGTGTTTTTAATGTCTGCGTTTCCAGAATGTCCCATTAttggattgtttgttttgtctgataCATACAACCACCATCAGGATAAATAAGAAGTAATGATTCTGTGGTACCAATATGTTATGGGTGATTACAATTACTGGCAAGTTTCCAGCACCAAAAAAATGCCTTCAACATGCAAATTCAATAGCAcacaaattaagtgattttctttctaaaataatgtatctgtaAAGGGATATAAGAGCACACTAGATTTGCACATCATACCTACCCTGTACTAATTTAGAAGGCATCTTAAAATGGTTAAAGTtacttacatatatacagtggggggaa

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU63103 True 1443 lncRNA 0.34 3 7220740 7222856

Neighbor

gene id symbol gene type direction distance location
AMCG00008629 NA coding upstream 471855 6747711 ~ 6748885 (+)
AMCG00008626 tecr,LOC107573605,LOC107703756,LOC107694603 coding upstream 501649 6692745 ~ 6719091 (+)
AMCG00008619 NA coding upstream 857710 6305726 ~ 6363030 (+)
AMCG00008618 NA coding upstream 1012989 6188494 ~ 6207751 (+)
AMCG00008617 NA coding upstream 1101388 6108963 ~ 6119352 (+)
AMCG00008641 NA coding downstream 131409 7354265 ~ 7354886 (+)
AMCG00008640 NA coding downstream 149172 7372028 ~ 7376143 (+)
AMCG00008645 gdf11 coding downstream 192943 7415799 ~ 7416230 (+)
AMCG00008643 gdf11,LOC108254821,LOC106513268,LOC107562248,LOC107573429,LOC107683628,LOC107385665 coding downstream 264314 7487170 ~ 7496005 (+)
AMCG00008644 NA coding downstream 320864 7543720 ~ 7552782 (+)
G50458 NA non-coding upstream 1559 7212746 ~ 7219181 (+)
G50450 NA non-coding upstream 53800 7022461 ~ 7166940 (+)
G50451 NA non-coding upstream 170378 7040921 ~ 7050362 (+)
G50367 NA non-coding upstream 569401 6646950 ~ 6651339 (+)
G50362 NA non-coding upstream 591094 6629438 ~ 6629646 (+)
G50461 NA non-coding downstream 10564 7233420 ~ 7248042 (+)
G50506 NA non-coding downstream 156192 7379048 ~ 7379506 (+)
G50534 NA non-coding downstream 310118 7532974 ~ 7542850 (+)
G50546 NA non-coding downstream 451285 7674141 ~ 7676185 (+)
G50561 NA non-coding downstream 470080 7692936 ~ 7828902 (+)
G50448 NA other upstream 202615 6957611 ~ 7018125 (+)
G50243 NA other upstream 1477990 5738541 ~ 5742750 (+)
G50215 NA other upstream 1623941 5596023 ~ 5596799 (+)
AMCG00008580 pnpla6,LOC106564686 other upstream 2647866 4561991 ~ 4572874 (+)
G49982 NA other upstream 3055257 4162058 ~ 4165483 (+)
AMCG00008639 NA other downstream 74030 7296886 ~ 7315850 (+)
G50583 NA other downstream 710973 7933829 ~ 7939771 (+)
AMCG00008664 Tuba1a,LOC107714908,LOC108433351,LOC103385219,LOC108255233,LOC108275946,LOC105930792 other downstream 1055997 8278853 ~ 8324778 (+)
G50747 NA other downstream 1227310 8450166 ~ 8666548 (+)
G50900 rnf41,LOC107701697,LOC107756409,LOC107723732,LOC107671855 other downstream 1858971 9081827 ~ 9087967 (+)

Expression


Co-expression Network