G50461


Basic Information

Item Value
gene id G50461
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 7233420 ~ 7248042 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU63108
GGCCTATGTGTCCATGCTGCATATGAGTTGTCAGTTCTGCGGAATGCCAGTTGCTGAGTATATCCcctgttaatgtatttaatggccTCAGCTCGACGCTCCAAACCCACTGTTTCCCACTGGCCAGTATTGTCCAAATAATGAGTGGCAATTACAGGTGAAGTTAGGCCAATCATGTTCTGTTCTCCACACCCACCGGGCTGTATGATTAGGTTTTTCAGAGAGGCACCATTAATGGCACTTACAATGGTTTCGCTTACAAGCTCGCCTGTCACACTGATAAAAGTCTGGGGCTCTGTATTTGGCACTATTGACTTCAGGGCAATTCTTTCAACCTTTTCTGCTTGATTTCCACCATGTTTAGAAGGATCCAGAATCACAGTTTTAATATTCTTCTTTGTTTGCACTCCTTCGGCCAACCCTAAGCTTCTTCTTCACACCATCAGCAATGAATTCCCCATAGACAGAAGCTTTAACCTCAATATCCTGCTCCCCAATTTGCATAGGGATAATGACAAAGGGGACAGCTCGAGAAGATAATGGATCAATGTACACTTCCtccttgtgttttcttttactgcTTGCAGCACTGCATATCTGTTCGTTCTCCATCAACTCCACACGTACtCGTATTTTCTGGTCTAAATAGTTGTAAAGTACAGCCTTAATTTCCACTTGTTCATTTCGCACTACTGAGTAGGGAAGCTTTAGATCTATGAAGAAGTCCTGCATCACTGTAATCTCATAGGGATCTGCCACACAGATTCCT
>TU63109
CCACCATCTCTCCGTGAATTACAGGGGCATCCTCTTTGAAGATTCCATCAGGATTCTGTTTATTGATAATCAGCCATTTTATTGCATCACATAACACTTTGTCATCCACTGAAATAAGGGGGTAAGCCAATGCAAACACCTTTGCCACATATGCTGTTAGCCtgGCCTATGTGTCCATGCTGCATATGAGTTGTCAGTTCTGCGGAATGCCAGTTGCTGAGTATATCCTAAAGTAGAATATcagcaaaataattaatgtaaaaaataacaacaacaataataatatttttcttgtttctgtgtaaaattgaagtaaatattaaaattgtattgactGTTTGTAATTTACACATAAAGGGTACAACAGTCAGGAAAGCTGagataacagaaaacaatttcTCTATCAAATTAGAAAATCCTTCTATCAAGTTACTACCTTTGTGTTACATgcagaatataaacaaaattatacaatatatatatatatatagcctgtcTGCGCTCTCTTCAGTGTGTAGGCAacgaatgtgtgtgtattttgacaGTTATGCTTTGTTGTAGTTTACACTAAAcagcatatttatatacatcatATAAAGAGGTTCACAGTAAGTTgatgaagaaaatgtgtataaaattgGAACTcagtatgtactgtacatttttaatattactgtGATAGGTCACTCCAGCTTAGCTGCTGGTGGATGTGTGTGGTTGGGATTCCCGTGCTGGCGGCTGTTTGTCATTCGGTCTTGTGTATAATTAAGCGCCGGTATGCACTGTCTTCTCAAGCGCGATCCCCCTAGTGTCTTCCGGACAGTTAGCCTGTCACAATTACTAGCACGCCTTGAGTCAAATACATgcttttatgatgatgatgatgattagcTCTATTcatgcaaattatatatttgagtCATGAATTCAAtcaaaaagaacacatttggtATGAACTCGAAATATGACTCAAGAAGACATAGACCAAGAGACCAAgcgcaggattaaatcaaaaatgttggcGCTGCGAGTCGCTTGCAGAAACATtagcgcatgtctgcgaatgaaaatcgcgctgctaaactatggCGGTTTTAAATCTGACCCGATTTGCTCCGCAAAATGACCTTCTCAcagctcctttcttgcacaacgtgacagaataaaacacagatttcaCACAGCtgctactacaacactacaccactgtactcagtcgcgctttcgtgtttagttagatgctactctcttaatttttaaagtaaatcccatgatgtacagttgtgtattttgctattagcggctggttaaagttgtagttaatcccacccaacaatacagtgggagtggttacattttcgatgcattaaatcaagaaaatatctgcgagaaaacaccctgaaaatgcACTCGCAGTTTCCctagttttagacaacttcagagttgtctaaagcctctcgtGGTTAAGGAAAAGTGGAAAGATTTTCCAATCGGCACAGGTTTGTACAGGTCTGCACCGTGTTTATTCACAGCTTCCATGGTTATGTGTGTCCAGTGGACATAATTGATTATTGCTATAGTAACTGCAGTGCAGGTGTACAGTGCGGGTAACAAAGTAATTACATGTTGcacccaacatccacacaatcgaaatgttgcctattgttcgttcacagagagaaaatatgttgttattgtagcgttaaggggggtgtattgtgataagagcattatagccctgagctggagctctgatcaaaagaagacttctcccccaaagttaccaaTTTTTCATctgcccatgaactgttctatgtcaaaatgacagtttagGGAGTCagctcacctagaatgggcaaagtggcttggaatccctgctgtgaaaacgtctggggaatagggcctggaggtcataaaaccctttgaagcgggcgagagccgaaatcccgaaacagagctacgaacccaggcaaaccggcatttccaaaagatggtaTGGATTGGCATCAggcataaatcgagcctcctccaataggagactggggggTTGGCACAAATCCAACCTCGCAAATTCAAGCACCAATCACCTGTGATCTGATGGCATAAAAAGTAGCGCacagcactttctctctctcgctctcgctctctctcac

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU63108 False 769 lncRNA 0.43 6 7234764 7248042
TU63109 True 2153 lncRNA 0.40 2 7233420 7236753

Neighbor

gene id symbol gene type direction distance location
AMCG00008629 NA coding upstream 484535 6747711 ~ 6748885 (+)
AMCG00008626 tecr,LOC107573605,LOC107703756,LOC107694603 coding upstream 514329 6692745 ~ 6719091 (+)
AMCG00008619 NA coding upstream 870390 6305726 ~ 6363030 (+)
AMCG00008618 NA coding upstream 1025669 6188494 ~ 6207751 (+)
AMCG00008617 NA coding upstream 1114068 6108963 ~ 6119352 (+)
AMCG00008641 NA coding downstream 106223 7354265 ~ 7354886 (+)
AMCG00008640 NA coding downstream 123986 7372028 ~ 7376143 (+)
AMCG00008645 gdf11 coding downstream 167757 7415799 ~ 7416230 (+)
AMCG00008643 gdf11,LOC108254821,LOC106513268,LOC107562248,LOC107573429,LOC107683628,LOC107385665 coding downstream 239128 7487170 ~ 7496005 (+)
AMCG00008644 NA coding downstream 295678 7543720 ~ 7552782 (+)
G50459 NA non-coding upstream 10564 7220740 ~ 7222856 (+)
G50458 NA non-coding upstream 14239 7212746 ~ 7219181 (+)
G50450 NA non-coding upstream 66480 7022461 ~ 7166940 (+)
G50451 NA non-coding upstream 183058 7040921 ~ 7050362 (+)
G50367 NA non-coding upstream 582081 6646950 ~ 6651339 (+)
G50506 NA non-coding downstream 131006 7379048 ~ 7379506 (+)
G50534 NA non-coding downstream 284932 7532974 ~ 7542850 (+)
G50546 NA non-coding downstream 426099 7674141 ~ 7676185 (+)
G50561 NA non-coding downstream 444894 7692936 ~ 7828902 (+)
G50563 NA non-coding downstream 491153 7739195 ~ 7740429 (+)
G50448 NA other upstream 215295 6957611 ~ 7018125 (+)
G50243 NA other upstream 1490670 5738541 ~ 5742750 (+)
G50215 NA other upstream 1636621 5596023 ~ 5596799 (+)
AMCG00008580 pnpla6,LOC106564686 other upstream 2660546 4561991 ~ 4572874 (+)
G49982 NA other upstream 3067937 4162058 ~ 4165483 (+)
AMCG00008639 NA other downstream 48844 7296886 ~ 7315850 (+)
G50583 NA other downstream 685787 7933829 ~ 7939771 (+)
AMCG00008664 Tuba1a,LOC107714908,LOC108433351,LOC103385219,LOC108255233,LOC108275946,LOC105930792 other downstream 1030811 8278853 ~ 8324778 (+)
G50747 NA other downstream 1202124 8450166 ~ 8666548 (+)
G50900 rnf41,LOC107701697,LOC107756409,LOC107723732,LOC107671855 other downstream 1833785 9081827 ~ 9087967 (+)

Expression


Co-expression Network