G50476


Basic Information

Item Value
gene id G50476
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 6947889 ~ 7151472 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU63134
CACCCTTTTTAGAGTTgctaaatattaattattttacatatattattgtttttagatTGCTCACATTCAAAGCCATTTCTCACTTCTTCATTATGGGCTGCAGCTGGATCTTGGGTTTCTTTCAAACGATCGGATTCTTGAGTTATGCCTTTGTCATCGTCAACTCTCTTCAGGGCCCTTTTATCTTCCTTGTACATTGTGTACTGAACAAACAGATAAGAGCAGAATACAGAAGACTTTTCAGACTCATGCACAAACAGAAGGAGAAACACGAATCATCTGCAATTACCATGGGAACTTTATCTGATACTGCTGGGCCCAGCACAGCCAGTGTGGTCCCCTGGTCTTCTCATCCCAGTGATGTTATTGTTACCAGAGAGAGGAAGgatGAATCTACTTCACAAatgccacaaaaataaaactgcaacaaAAAACTGATGCATTTGCATGACTATTTTAAGATACTGTTGAACATTGAGCTTTGCATTATGATCAATATATTTAGCAATAATAACCTAAAATATATTCTGAGCTTGtagatgttttgtttgattgtaaGCATGTATTCAGATACAGAGAATTTCAGTCAAATACTGAACAAACATTTATGtgacacaatacattttctaagcATTTGTTAATAGAGAATTTGGATCTAgaagaaaagggggggaaattactgtttaaattacagttttaaactGAGAACTGTTGTAtactattgtattttaaaagtatttttgagATATTGACTGCTTTATGTGTACTGTGCATTAATAAAGTTTGTGACTGGCATTGTTATATGTCTGGATCTTATTTCCAACAATGAAAATTACACAAATGAAGCCTTTTTC
>TU63135
CACCCTTTTTAGAGTTgctaaatattaattattttacatatattattgtttttagatTGCTCACATTCAAAGCCATTTCTCACTTCTTCATTATGGGCTGCAGCTGGATCTTGGGTTTCTTTCAAACGATCGGATTCTTGAGTTATGCCTTTGTCATCGTCAACTCTCTTCAGGGCCCTTTTATCTTCCTTGTACATTGTGTACTGAACAAACAGATAAGAGCAGAATACAGAAGACTTTTCAGACTCATGCACAAACAGAAGGAGAAACACGAATCATCTGCAATTACCATGGGAACTTTATCTGATACTGCTGGGCCCAGCACAGCCAGTGTGGTTCCCTGCTCTTCTGATCCCAGTGATGCTTGTCTtaccagagacagagaggaTGGATCTACTTCACAAATGccctgaaaacaaaactgacaaaaacTGATGGATTTGGATATATTACTTTAAGATACTGTTGAAGATTTAGCTTTGCATTATGATAAATATATTCTGAGcttgtatatgttttgtttgattttatacatCTATTCAGATACAGGGAGTTTCAGtcaaatactgaaaaaacatatttatgtaacCTAGTACACATCTTTTAAGCAGTTACATTTGTTAATAGAGAATTGGGATCTagaagaaaaggggggaaattGCTGTTTTAAACCGAGAACTGttgtatacttttgttttttaagagtaTTTTTGAGATATTGACTGCTTTATGTGTACCGTGCATTAATAAAGTTTGTGACTGGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63134 True 854 TUCP 0.34 4 7145625 7151472
TU63135 False 765 TUCP 0.36 4 6947889 7151472

Neighbor

gene id symbol gene type direction distance location
AMCG00008632 asf1b,asf1bb,LOC103026007,LOC107599302,LOC108429686,LOC101069596 coding downstream 32445 6908774 ~ 6915444 (-)
AMCG00008630 samd1,LOC108442215,LOC100700176 coding downstream 118190 6819964 ~ 6829699 (-)
AMCG00008631 LOC107580959 coding downstream 143381 6798763 ~ 6804508 (-)
AMCG00008627 LOC108442223,LOC107594236,LOC107703743,LOC103374416,LOC100702196 coding downstream 205660 6720582 ~ 6742229 (-)
AMCG00008628 ndufb7,ndub7,LOC106591659 coding downstream 228805 6716109 ~ 6719084 (-)
AMCG00008636 NA coding upstream 62197 7213669 ~ 7276093 (-)
AMCG00008637 NA coding upstream 164654 7316126 ~ 7337849 (-)
AMCG00008638 tubb4b,tubb2b,LOC107587400,LOC107393497,LOC104942712,LOC103024068,LOC107717448 coding upstream 189962 7341434 ~ 7342284 (-)
AMCG00008642 ccnt1,ccnt2,LOC102787965 coding upstream 235580 7387052 ~ 7402820 (-)
AMCG00008647 gdf11 coding upstream 282848 7434320 ~ 7517842 (-)
G50437 NA non-coding downstream 42312 6905340 ~ 6905577 (-)
G50435 NA non-coding downstream 43500 6904077 ~ 6904389 (-)
G50381 tecr,LOC107703756,LOC107573605,LOC107594239,LOC107390378 non-coding downstream 241600 6692806 ~ 6706289 (-)
G50372 NA non-coding downstream 296546 6647011 ~ 6651343 (-)
G50361 NA non-coding downstream 320864 6626109 ~ 6627025 (-)
G50496 NA non-coding upstream 215153 7366625 ~ 7366930 (-)
G50514 NA non-coding upstream 227566 7379038 ~ 7379487 (-)
G50557 NA non-coding upstream 502608 7654080 ~ 7657391 (-)
G50558 NA non-coding upstream 510680 7662152 ~ 7662442 (-)
G50560 NA non-coding upstream 517376 7668848 ~ 7676186 (-)
AMCG00008634 NA other downstream 14800 6920707 ~ 6933089 (-)
AMCG00008633 prkaca,LOC108429687 other downstream 62202 6839077 ~ 6885687 (-)
G50267 LOC107575789 other downstream 1062439 5748890 ~ 5885450 (-)
AMCG00008608 NA other downstream 1153894 5786620 ~ 5793995 (-)
AMCG00008609 NA other downstream 1161561 5655689 ~ 5786328 (-)
G50602 NA other upstream 749863 7901335 ~ 7902606 (-)
G50656 NA other upstream 983109 8134581 ~ 8135414 (-)
AMCG00008662 NA other upstream 1031457 8182929 ~ 8190177 (-)
G50710 NA other upstream 1117551 8269023 ~ 8269326 (-)
G50712 tuba1c,LOC108255233,LOC108433351,LOC103467923,LOC106456382,LOC102313992,LOC107707018,LOC107557552,LOC105930792,LOC107697948,LOC102193505 other upstream 1118852 8270324 ~ 8294354 (-)

Expression


Co-expression Network