G50546


Basic Information

Item Value
gene id G50546
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 7674141 ~ 7676185 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU63219
ACTTGGTTACTAGAAACTAAATGGTCAAATAAATCCATCAATCTGATTCTTTAAAGTGCCCATGGATTCAGCTCAACATTTTCTTCCAGACCCCCACAACTAATGAAgtgtcttgtttattttgttttgaagcctCTTGAACCGGTTTTCCACTTGTATCCCCTGGTTCTTGTATCTTTGCTGATCTTAAACATGTCCTATGGTTCGACATGGTTAATTCCTCTCAGAATCTTGAATAGCTCAATACCTGAGCTACCAGTCTTCACGGTACTGTAGCTGCTGCATTGACGCAAAGGTTATTAATGTTAATCCTTCCTGGTAGTACCTAATTATAAGTGGTAATACTTTTGTGAAATAGCCTGCTGCCCCGAATGCTTCTTAAACTGAGCCATACACAATGCTAATGAGGAAACAAGACCTGGGTGTTCCTGAAACCACAAGGcatgatcaaattaaaaaagaaaaactatttgtcATTGTAAGGTTTTAAGGATTGTTAGTTTACCTTAATTGTCAGATTATTTCAATGCTTTTGGTAATTGCCCTGTTGCAATGTCTTCCCTTTTGCAGATATTCATCTGCTATAATAGACCAGTTTGTGAATGACCTTCCAAAGAAGAATGCTTTTCTTGGACTATAGGAAGTGACACAATGTACATTTGATAGGTTGGCAATGCGATGCATGTAACAACTCAGCGAAATCcccaatgtttttattttgtcaaaaggAGCCTTTTTCAGCTGTCagataaatgttatgttttttcaaCTCTTGACACTAGTTTCAGTATTATATACGTACAATGTTGTCACGGTACACACAGTATGTGGATCTTTCACCTTTTGTCATTGTCCCCAGGTAGTAATGCTTCAGTCCATTTCTTCCAGCTTTTCAAGGTATCTGTAAAACATGGAATGGGTTCTATTGTACAAAGAGCTCGTGCTCATTAACTTTGGGGTCAGAAACTCAGGTATGACCTCAATTGCCTACTGGACTGTGGCTCCTGCCCTTTTTAATACAGCAGACCCTGCCTgcataatgaaatatttaacataatCTAATCATCCCATAAGCACAAGGGTGTCCAATATCTTTGCTTGTCTAAAAACAAGTTGAATTAAAAAGGATGTACAAAGCCTTGACATCACATTCATATAAACAGAAAGTATCTCTAAAATCCTTTCAAAATATACCTGCATAAAATTGTGCGTTTGGTGCACAATTACCAAATCCCTCAATGGGTCGTACAGCAGAAGAGGCTAGCCTGGccatcatgttttatagatcGCTATTAACCATCAGCTTCTAAAGACTTGCATTAAATTATGTCAATAGTAGACTACTGTTCTCATAAAACAGATTCATTCATTGAACAAGTTAAGACATCAGTTCATAAGTCCAGGGGTAACcattcttcttaaaaaaaaatctatagttCAAAGCTTCTCCTGCATGTTaccacagagaaaacatgcatgAACCAATAATGGCTCACTCTTGCCAACTATAGAGATATAGAGGGAAAATGTGTCTGAATAATACTGAGCCAGCTCTGATTCAAGCCATGGTTTATACCATCAGTGTAACAAAACATAGCTCATAATGCATAGATGTACTGAATATGTTCCTTTAGTTTGCTGTATCTGTAGTGTAGTACATTATGGACAACTGTAATAAGGATGTcccatgtttttgttgttcttatttattCACATATTTTGCCAAatcttttacatattttaagccTGTTTATCTTATTTGACCTCCCTCTTCcattatgtggaaaaaaaagattttactCATTTCAGGTCTGTctgttgtgtaaataaataaacaaataactggattttgtatttattttttgtaaatagtaTTTCAAGGTGctatgtaaaatgcatttccacAGCTGTTCAATGAAAGCCATAagaaattgttttatgtattttaataatgcagtaaaaagAAGGAGGGGGGAAagctacaaaaacaataatatatggCTCAACTACAACTTGtaaaaccaagaaataaaatacattctgtg

Function

GO:

id name namespace
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0097485 neuron projection guidance biological_process
GO:0007411 axon guidance biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63219 True 2045 lncRNA 0.36 1 7674141 7676185

Neighbor

gene id symbol gene type direction distance location
AMCG00008648 NA coding upstream 4797 7622630 ~ 7669344 (+)
AMCG00008644 NA coding upstream 121359 7543720 ~ 7552782 (+)
AMCG00008643 gdf11,LOC108254821,LOC106513268,LOC107562248,LOC107573429,LOC107683628,LOC107385665 coding upstream 178136 7487170 ~ 7496005 (+)
AMCG00008645 gdf11 coding upstream 257911 7415799 ~ 7416230 (+)
AMCG00008640 NA coding upstream 297998 7372028 ~ 7376143 (+)
AMCG00008649 LOC106565510,LOC106583272,LOC108424584 coding downstream 46056 7722241 ~ 7725184 (+)
AMCG00008651 LOC103362051 coding downstream 107423 7783608 ~ 7819242 (+)
AMCG00008652 NA coding downstream 325411 8001596 ~ 8016744 (+)
AMCG00008653 NA coding downstream 345483 8021668 ~ 8036234 (+)
AMCG00008657 NA coding downstream 424410 8100595 ~ 8101654 (+)
G50534 NA non-coding upstream 131291 7532974 ~ 7542850 (+)
G50506 NA non-coding upstream 294635 7379048 ~ 7379506 (+)
G50461 NA non-coding upstream 426099 7233420 ~ 7248042 (+)
G50459 NA non-coding upstream 451285 7220740 ~ 7222856 (+)
G50458 NA non-coding upstream 454960 7212746 ~ 7219181 (+)
G50561 NA non-coding downstream 16751 7692936 ~ 7828902 (+)
G50563 NA non-coding downstream 63010 7739195 ~ 7740429 (+)
G50571 NA non-coding downstream 148698 7824883 ~ 7826540 (+)
G50579 NA non-coding downstream 220668 7896853 ~ 7900191 (+)
G50616 NA non-coding downstream 314240 7990425 ~ 7990717 (+)
AMCG00008639 NA other upstream 358291 7296886 ~ 7315850 (+)
G50448 NA other upstream 656016 6957611 ~ 7018125 (+)
G50243 NA other upstream 1931391 5738541 ~ 5742750 (+)
G50215 NA other upstream 2077342 5596023 ~ 5596799 (+)
AMCG00008580 pnpla6,LOC106564686 other upstream 3101267 4561991 ~ 4572874 (+)
G50583 NA other downstream 257644 7933829 ~ 7939771 (+)
AMCG00008664 Tuba1a,LOC107714908,LOC108433351,LOC103385219,LOC108255233,LOC108275946,LOC105930792 other downstream 602668 8278853 ~ 8324778 (+)
G50747 NA other downstream 773981 8450166 ~ 8666548 (+)
G50900 rnf41,LOC107701697,LOC107756409,LOC107723732,LOC107671855 other downstream 1405642 9081827 ~ 9087967 (+)
AMCG00008696 nabp1,LOC106565411,LOC106575791,LOC107675336 other downstream 1440490 9116675 ~ 9122812 (+)

Expression


Co-expression Network