G50563


Basic Information

Item Value
gene id G50563
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 7739195 ~ 7740429 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU63237
CAGTCCACTGGATCACAGGCAATCACACACCTTTACCAATTGCCCCTCTGGACACAGCAAACCCTCAATATAGCCCTACTGCTTTGAGCAGGAACTGTGAGCACTGTAaggtcagcagaatatataacCAGACCCCCTGGCATGCCAGGTGCCCCTCTGCCACTTCCTGGAGAGgcccagctttgctcagtggcatgtctgagggacctgaataacTCAGGGAAAACAGAACACCAATGTTTGCCTGGGTCAGTTTGCAAAAAAAGGtgtattatttcagtgttatgtaCATAGTTTATCGacaaacaatgcatatttcaatacctaAGGCTCTGAAAGAGCATGTGTCAAAACTTCACTATTACTGTGTGGCGTGCAATCAATAATAACTTAATTTCTgagtttgtttactttattacacattttccacTCAAATGCTACATtgtaagtacattatacatgcatataacTTTTAGCTGAGGTTGTTctgaaaaaatagatataaaacactttgtgGTTCATAAGCAAATTGTTTACCAGCTAGAATTTAAAAGTGGGAAAAAATGGGAAAATTAGCTCAGTCCTCCAAGGGTTAAAAGTCTTCACTTTTAGCATTTaagtttataattatatattaggttacaaaaatgtgtatacaCCATTTTGTAACTTCAGAAAAATTAACATGATAAGAAGGgcctgaatacttttgcaaggcactgtagatttcttttttttttttttttttttacctgtgaAGAATGCAAATCCTGCTAGGATGCCCAGTCTTTTCTTCTCAGTCTCAGGATTGTGTGGAGTCATCGCAAGCCAGGCCATCATCCCTAAAGAAGCCAACAGGGACAGCACACCACCCTGAAATCCTTGTGACAACATGGACGTATGCACCTGCCCCTGCCACGAACATGCACACGGCCAAGCTGGAGTACACATTCTTCAGGTGCTGCTGGGTAGAGCGGgagctgaaaaaagaaaaatgaaaataac

Function

NR:

description
PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1A-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63237 True 1005 lncRNA 0.40 2 7739195 7740429

Neighbor

gene id symbol gene type direction distance location
AMCG00008649 LOC106565510,LOC106583272,LOC108424584 coding upstream 14011 7722241 ~ 7725184 (+)
AMCG00008648 NA coding upstream 69851 7622630 ~ 7669344 (+)
AMCG00008644 NA coding upstream 186413 7543720 ~ 7552782 (+)
AMCG00008643 gdf11,LOC108254821,LOC106513268,LOC107562248,LOC107573429,LOC107683628,LOC107385665 coding upstream 243190 7487170 ~ 7496005 (+)
AMCG00008645 gdf11 coding upstream 322965 7415799 ~ 7416230 (+)
AMCG00008651 LOC103362051 coding downstream 43179 7783608 ~ 7819242 (+)
AMCG00008652 NA coding downstream 261167 8001596 ~ 8016744 (+)
AMCG00008653 NA coding downstream 281239 8021668 ~ 8036234 (+)
AMCG00008657 NA coding downstream 360166 8100595 ~ 8101654 (+)
AMCG00008656 NA coding downstream 385570 8125999 ~ 8138061 (+)
G50546 NA non-coding upstream 63010 7674141 ~ 7676185 (+)
G50534 NA non-coding upstream 196345 7532974 ~ 7542850 (+)
G50506 NA non-coding upstream 359689 7379048 ~ 7379506 (+)
G50461 NA non-coding upstream 491153 7233420 ~ 7248042 (+)
G50459 NA non-coding upstream 516339 7220740 ~ 7222856 (+)
G50571 NA non-coding downstream 84454 7824883 ~ 7826540 (+)
G50579 NA non-coding downstream 156424 7896853 ~ 7900191 (+)
G50616 NA non-coding downstream 249996 7990425 ~ 7990717 (+)
G50617 NA non-coding downstream 255326 7995755 ~ 7996061 (+)
G50627 NA non-coding downstream 328331 8068760 ~ 8075004 (+)
AMCG00008639 NA other upstream 423345 7296886 ~ 7315850 (+)
G50448 NA other upstream 721070 6957611 ~ 7018125 (+)
G50243 NA other upstream 1996445 5738541 ~ 5742750 (+)
G50215 NA other upstream 2142396 5596023 ~ 5596799 (+)
AMCG00008580 pnpla6,LOC106564686 other upstream 3166321 4561991 ~ 4572874 (+)
G50583 NA other downstream 193400 7933829 ~ 7939771 (+)
AMCG00008664 Tuba1a,LOC107714908,LOC108433351,LOC103385219,LOC108255233,LOC108275946,LOC105930792 other downstream 538424 8278853 ~ 8324778 (+)
G50747 NA other downstream 709737 8450166 ~ 8666548 (+)
G50900 rnf41,LOC107701697,LOC107756409,LOC107723732,LOC107671855 other downstream 1341398 9081827 ~ 9087967 (+)
AMCG00008696 nabp1,LOC106565411,LOC106575791,LOC107675336 other downstream 1376246 9116675 ~ 9122812 (+)

Expression


Co-expression Network