G50571


Basic Information

Item Value
gene id G50571
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 7824883 ~ 7826540 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU63252
GGGTGACTCGCCCCCGCATTCAGCCCTGCACTACAATACATGAGTAAAGATTCACATGAATGTGTTTCAAGGTAAGCTTTTAACCCAGGGTTGAGAATCTCAATCTCTAACAGGGCGAGTTCACCCCGGCTTCAGAGTTTCGTCTCAGGTTGAAGATATGACAATGTGAAAGTGCTCGATTTTCGACCAGTGATCGCCCTTGTTCAACTGtctagtgtgaaagcagctttagataaaagtttatttgaaatcaCAGTTGATATACAATGAAGGGGAAAAAGCtttgattacaaaatgcattgatttacaAACGAGACAAACAGActagtacattttcttttgatggtCAATGTCTCAATCTGTAATTTCATGAAAAAGAAAGTCAAAAGCTAACATGATttgaattatgaaaaataattaaagagcACTTTAATCAAACCAAATCTGGTCTACTGGCATCTCACTGAAtttcaaccctggtcctggaatgCCAATTACtttattagaaatgttttttggttAGTCTGTTGTGAAAACAGGGGAGATAGTGGAAGTCATGATTTAAGCAGTGGTGTAGTCCCTCAGTAGGCCATGTTGATTTAACAATCAGATCTGATATTTGGAAGGTATTAAAGTGCAATTTCaaatttgtaataaatacatgcgtacatttaaaaaaattaaataaactggaaCTCAATACTGCCATCACTTGTTAGCCACAATTACACAAATCAATCATTGTACCATATGCTGATATTGCAGGGGAGAAAGAGTTACaggactttaatttaatttctgattattgtattttttttttGTCAGCTGAGCTCACCACAGCACTCCACAGCCTGGAGCCAGCAAAGCCTTTGCACATTTCTTGGGTTGGCTTCCATCACTTGTACTAAAAAGGCAGTTCTGGGGAACCCTGGTTCTGGAAGGCTACCATGACTGTCTTGTTTAGTTCTACCCCAAATGTGAACCAATGAGAACAGCTATAAAACGGCCATGGAAGAATGCGTGTTCATTATATTattgaagtatatatttttttattacacagatCTATCCATTTGTTTCACAATGCTTTGTTTGGTTTACCTGGAGATCCTTTCAGGCCCTCTTTTGGGTTATTCAGTTGTGACTGCATAAAAAGAATGAAATCTGCTTGAAAATGAATAACCTGAATGTAAAACTTGATGCAAAGTGATACTCAAATGCCCTTGCCTCCCAAATGCCCCCACACCAATCTCAGGGCTTTGGCACAATGCTGCCACCCTGGCAATCGGAGCCAAAAAGTGTGTCCTGACGTCTCTCACTAACGTGTGACGCAGGGCCGGAGCAGCACTTCCAGTGATCACGAAAGCCAAGTCTGCTAGGTGTACAGCTGGGAATTAGAGGTCATGGAGGATGATCTGGAAGACTACGCTGTACTACACCACTCCCTCGGGTCTGCAACCACATGTTTTCACTCTGAGCTCTGCTGTGGGTTGTTCTTCCCTGGCAGGTGCTGACGGACATCTAAAGACCCCGTTTAGAGGGGAGTCACTGGTCATCATCTAGTTGCTGCAAAAgagtcctcctcctcttctccagCTCTCCTTCGCTCAGTTCACTCTCTGAGGTGTCCCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63252 True 1633 lncRNA 0.41 2 7824883 7826540

Neighbor

gene id symbol gene type direction distance location
AMCG00008651 LOC103362051 coding upstream 5641 7783608 ~ 7819242 (+)
AMCG00008649 LOC106565510,LOC106583272,LOC108424584 coding upstream 99699 7722241 ~ 7725184 (+)
AMCG00008648 NA coding upstream 155539 7622630 ~ 7669344 (+)
AMCG00008644 NA coding upstream 272101 7543720 ~ 7552782 (+)
AMCG00008643 gdf11,LOC108254821,LOC106513268,LOC107562248,LOC107573429,LOC107683628,LOC107385665 coding upstream 328878 7487170 ~ 7496005 (+)
AMCG00008652 NA coding downstream 175056 8001596 ~ 8016744 (+)
AMCG00008653 NA coding downstream 195128 8021668 ~ 8036234 (+)
AMCG00008657 NA coding downstream 274055 8100595 ~ 8101654 (+)
AMCG00008656 NA coding downstream 299459 8125999 ~ 8138061 (+)
AMCG00008663 LOC107714908 coding downstream 417501 8244041 ~ 8273718 (+)
G50563 NA non-coding upstream 84454 7739195 ~ 7740429 (+)
G50546 NA non-coding upstream 148698 7674141 ~ 7676185 (+)
G50534 NA non-coding upstream 282033 7532974 ~ 7542850 (+)
G50506 NA non-coding upstream 445377 7379048 ~ 7379506 (+)
G50461 NA non-coding upstream 576841 7233420 ~ 7248042 (+)
G50579 NA non-coding downstream 70313 7896853 ~ 7900191 (+)
G50616 NA non-coding downstream 163885 7990425 ~ 7990717 (+)
G50617 NA non-coding downstream 169215 7995755 ~ 7996061 (+)
G50627 NA non-coding downstream 242220 8068760 ~ 8075004 (+)
G50668 NA non-coding downstream 363285 8189825 ~ 8190785 (+)
AMCG00008639 NA other upstream 509033 7296886 ~ 7315850 (+)
G50448 NA other upstream 806758 6957611 ~ 7018125 (+)
G50243 NA other upstream 2082133 5738541 ~ 5742750 (+)
G50215 NA other upstream 2228084 5596023 ~ 5596799 (+)
AMCG00008580 pnpla6,LOC106564686 other upstream 3252009 4561991 ~ 4572874 (+)
G50583 NA other downstream 107289 7933829 ~ 7939771 (+)
AMCG00008664 Tuba1a,LOC107714908,LOC108433351,LOC103385219,LOC108255233,LOC108275946,LOC105930792 other downstream 452313 8278853 ~ 8324778 (+)
G50747 NA other downstream 623626 8450166 ~ 8666548 (+)
G50900 rnf41,LOC107701697,LOC107756409,LOC107723732,LOC107671855 other downstream 1255287 9081827 ~ 9087967 (+)
AMCG00008696 nabp1,LOC106565411,LOC106575791,LOC107675336 other downstream 1290135 9116675 ~ 9122812 (+)

Expression


Co-expression Network