XLOC_000604 (lrrc58a)


Basic Information

Item Value
gene id XLOC_000604
gene name lrrc58a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 47486104 ~ 47492961 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001039
AATCAGGCGCGCGCACTTCAGGCAGCAGCACTAAAGGGCATTTTCTAACgttataatgtaatatatgtgTACAGATTACACATCAATAACTTGTAGATAACTTTCTTTTACATTGTCGCACCATTAGAAAGTGTGCTGCCTAGCTTTATTTAATTCCCAGTGTTATTTTCCTCTTACTAAACAGTCCATATGGCTCGTTTCCCAAGCGTAGACGACAAGTGTGCAGTTTTACATTTATCCCGTCTGCATCTGGACGACCTGAACTTGGATCATCTGGCGGACAGCAAAAGAAAACAGATCCAGCAGCTTCACCTTACCTACAACCGCCTGACGCTTCTCCCGACTTCTGTCTGCTTTCTGTCCAACCTGGAGTATCTGGATATCAGCAATAACGCGCTCACGGTCATACCAGATGACATTATGCGATTGAAGAACTTAAAGACGTTTGTTGCAAAGAATAATCTTTTGAACGAGTGCTCGTTTCCGAAGGACTTCGACTGCATTCGTGTGGAGACTCTGAATCTGAGTGGAAACAGGTTTGAGGATATTCCCGCGCAGTTTCTCAAAATGACTACACTACAGTCCCTGTCCCTTGGAGGAAATAGGCTAAAGGCTATTCCTGAAGAAATACAGAACCTGACCAGTCTAGAGATGCTGTATTTGGGAGGGAACCTCATCTCCTCGATCCCACCTGAGGTGGCTAAACTCACCTGTCTGAGATACCTGGTCCTGTGTGACAATCGCATCCAAAGCGTACCACCCCAGCTCAACAAACTACACTCCCTGCTCTCTCTCAGTCTCCACAATAACCTGCTGACCTTCCTGCCTCGTGAGATCCTCAGCCTCGTTCATTTGCAGGAGCTCAGTCTGCGTGGAAACCCTCTGGTGGTGCGCTTCATCAAGGACATGACCTATGACCCTCCGTCTCTGATGGAGCTCGCAGGGCGCACCGTCAAGTCCCAAAACCTTCCGTTCCGCTCGTGTGATCTGCCGGCCAATCTGATCTATTATTTAAACCTGGCTAGCGAATGTCCCAACCCAAAATGTGCAGGTGTTTACTTCGACTCATGTGTGAGACACATCAAGTTTGTGGATTTCTGCGGGAAGTACCGCCTGCCGCTTATGCATTACCTGTGCTCCCCGCAGTGTTCCTCTCCCTGCAGCTCAAACCCACAGAGCGACGCTGAATCAGAAGAGGAGAACAGCGTCCCCGCAGACAGGCTCCAGAGGGTCTTGCTGGGATAG
>TCONS_00001040
AGGCAGCAGCACTAAAGGGCATTTTCTAACgttataatgtaatatatgtgTACAGATTACACATCAATAACTTGTAGATAACTTTCTTTTACATTGTCGCACCATTAGAAAGTGTGCTGCCTAGCTTTATTTAATTCCCAGTGTTATTTTCCTCTTACTAAACAGTCCATATGGCTCGTTTCCCAAGCGTAGACGACAAGTGTGCAGTTTTACATTTATCCCGTCTGCATCTGGACGACCTGAACTTGGATCATCTGGCGGACAGCAAAAGAAAACAGATCCAGCAGCTTCACCTTACCTACAACCGCCTGACGCTTCTCCCGACTTCTGTCTGCTTTCTGTCCAACCTGGAGTATCTGGATATCAGCAATAACGCGCTCACGGTCATACCAGATGACATTATGCGATTGAAGAACTTAAAGACGTTTGTTGCAAAGAATAATCTTTTGAACGAGTGCTCGTTTCCGAAGGACTTCGACTGCATTCGTGTGGAGACTCTGAATCTGAGTGGAAACAGGTTTGAGGATATTCCCGCGCAGTTTCTCAAAATGACTACACTACAGTCCCTGTCCCTTGGAGGAAATAGGCTAAAGGCTATTCCTGAAGAAATACAGAACCTGACCAGTCTAGAGATGCTGTATTTGGGAGGGAACCTCATCTCCTCGATCCCACCTGAGGTGGCTAAACTCACCTGTCTGAGATACCTGGTCCTGTGTGACAATCGCATCCAAAGCGTACCACCCCAGCTCAACAAGTAAGATCTCCTCTTCCTTCTTTCTAAAGTCAAAGCAGGGTGGTGATTAAAAATAAACGACATCAGATTTCTTTTCTTTGTAGACTACACTCCCTGCTCTCTCTCA

Function

symbol description
lrrc58a Orthologous to human LRRC58 (leucine rich repeat containing 58).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-76 Orthologous to human LRRC58 (leucine rich repeat containing 58).

Ensembl:

ensembl_id ENSDARG00000076773

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001039 False 1245 mRNA 0.49 4 47486104 47492961
TCONS_00001040 True 860 lncRNA 0.44 2 47486123 47490094

Neighbor

gene id symbol gene type direction distance location
XLOC_000603 fstl1a coding upstream 744 47459723 ~ 47485360 (+)
XLOC_000602 NA coding upstream 26598 47453593 ~ 47459506 (+)
XLOC_000601 gja8b coding upstream 37254 47446032 ~ 47448850 (+)
XLOC_000600 bcl9 coding upstream 74918 47331644 ~ 47411186 (+)
XLOC_000599 morc3b coding upstream 283941 47178529 ~ 47202163 (+)
XLOC_000605 stn1 coding downstream 6927 47499888 ~ 47513484 (+)
XLOC_000606 sh3pxd2aa coding downstream 92739 47585700 ~ 47686888 (+)
XLOC_000607 cfap58 coding downstream 338658 47831619 ~ 48012257 (+)
XLOC_000608 CR381623.1 coding downstream 404308 47897269 ~ 47897385 (+)
XLOC_000609 CR381623.2 coding downstream 421134 47914095 ~ 47914209 (+)
XLOC_000597 NA non-coding upstream 330107 47153190 ~ 47155997 (+)
XLOC_000595 NA non-coding upstream 521876 46959902 ~ 46964228 (+)
XLOC_000593 CU986305.1 non-coding upstream 640428 46827891 ~ 46845676 (+)
XLOC_000592 NA non-coding upstream 749988 46735728 ~ 46736116 (+)
XLOC_000610 NA non-coding downstream 665436 48158397 ~ 48158958 (+)
XLOC_000611 NA non-coding downstream 738895 48231856 ~ 48232312 (+)
XLOC_000613 NA non-coding downstream 1342263 48835224 ~ 48836922 (+)

Expression


Co-expression Network