G50627


Basic Information

Item Value
gene id G50627
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8068760 ~ 8075004 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU63317
CTTTGTGACTGTTTCTCTTGGCCATCTTGAAATCCCAAATACGGACTAGATAGTTGAAAATTATACAATGAAGGAGAAAAGCTGGTAAAGTCCAAACAAGGTCTCTCAGAGGGCTACAGTTTAAGTGGATGTAGTGTATCGTAGGACTGGGAATGGAGGATCTGCTCAGCTTTTGTTCGAAAGGTAAAAGGGGGGGGGAAATATGTCCTTTCAGTCTCGTTCACAAACTTGCTTTTAATGTCGCTCCAGTCTTCCCTAGACAGTCTAGTACCGCCtgctcctctttccttctctGTATCCGTCAATCTCTGGTGTCTCCCCCTCACAATGCAGCAACAGCTCACATTACAAACCCAGGGAACTTGGAAAGGAAGAGAGTCTGAAGTCAAGCGCAAGGCGCCACAGACCTCTGCAGGGATGAACACATCCTCCTTACAAGCTTAGAACACTGgcttCTTATTTTTAAGTGACCTTAAACTCcaaagcataaaaaaaacattgaaatatagGGTGCATATTGCACCGATATAATTTCTATAGATTCATATTAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63317 True 553 lncRNA 0.43 2 8068760 8075004

Neighbor

gene id symbol gene type direction distance location
AMCG00008653 NA coding upstream 32526 8021668 ~ 8036234 (+)
AMCG00008652 NA coding upstream 52016 8001596 ~ 8016744 (+)
AMCG00008651 LOC103362051 coding upstream 249518 7783608 ~ 7819242 (+)
AMCG00008649 LOC106565510,LOC106583272,LOC108424584 coding upstream 343576 7722241 ~ 7725184 (+)
AMCG00008648 NA coding upstream 399416 7622630 ~ 7669344 (+)
AMCG00008657 NA coding downstream 25591 8100595 ~ 8101654 (+)
AMCG00008656 NA coding downstream 50995 8125999 ~ 8138061 (+)
AMCG00008663 LOC107714908 coding downstream 169037 8244041 ~ 8273718 (+)
AMCG00008665 LOC103367933,LOC106456382,LOC108433351,LOC107714908 coding downstream 201767 8276771 ~ 8293517 (+)
AMCG00008671 cdk2,LOC107570445,LOC107683630 coding downstream 282424 8357428 ~ 8364543 (+)
G50617 NA non-coding upstream 72699 7995755 ~ 7996061 (+)
G50616 NA non-coding upstream 78043 7990425 ~ 7990717 (+)
G50579 NA non-coding upstream 168569 7896853 ~ 7900191 (+)
G50561 NA non-coding upstream 239858 7692936 ~ 7828902 (+)
G50668 NA non-coding downstream 114821 8189825 ~ 8190785 (+)
G50692 NA non-coding downstream 171573 8246577 ~ 8246832 (+)
G50698 NA non-coding downstream 194003 8269007 ~ 8269326 (+)
G50757 NA non-coding downstream 497725 8572729 ~ 8589128 (+)
G50823 NA non-coding downstream 728202 8803206 ~ 8809391 (+)
G50583 NA other upstream 128989 7933829 ~ 7939771 (+)
AMCG00008639 NA other upstream 752910 7296886 ~ 7315850 (+)
G50448 NA other upstream 1050635 6957611 ~ 7018125 (+)
G50243 NA other upstream 2326010 5738541 ~ 5742750 (+)
G50215 NA other upstream 2471961 5596023 ~ 5596799 (+)
AMCG00008664 Tuba1a,LOC107714908,LOC108433351,LOC103385219,LOC108255233,LOC108275946,LOC105930792 other downstream 203849 8278853 ~ 8324778 (+)
G50747 NA other downstream 375162 8450166 ~ 8666548 (+)
G50900 rnf41,LOC107701697,LOC107756409,LOC107723732,LOC107671855 other downstream 1006823 9081827 ~ 9087967 (+)
AMCG00008696 nabp1,LOC106565411,LOC106575791,LOC107675336 other downstream 1041671 9116675 ~ 9122812 (+)
AMCG00008710 NA other downstream 1235082 9310086 ~ 9316151 (+)

Expression


Co-expression Network