G50712 (tuba1c,LOC108255233,LOC108433351,LOC103467923,LOC106456382,LOC102313992,LOC107707018,LOC107557552,LOC105930792,LOC107697948,LOC102193505)


Basic Information

Item Value
gene id G50712
gene name tuba1c,LOC108255233,LOC108433351,LOC103467923,LOC106456382,LOC102313992,LOC107707018,LOC107557552,LOC105930792,LOC107697948,LOC102193505
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8270324 ~ 8294354 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU63428
CTGACGGCGGGCCGGCGGCGTATATATTGCCGCACCCAGGACGACACGCAGCAAACTTCTCACAATAGACTCCTAAAGGTCTCTGCGTGAGAGTTGATCCGTACTGAACATTTTAGCCTTTTATCTTCATCCCAAAACACCACAGCTCTAAAATGcgTGAGTGCATCTCCATCCACGTTGGCCAGGCTGGTGTCCAGATTGGCAATGCCTGCTGGGAGCTCTATTGCCTGGAGCACGGGATCCAGCCTGATGGCCAGATGCCCAGCGACAAGACCATTGGAGGAGGGGATGACTCCTTCAACACCTTCTTCAGTGAGACTGGAGCGGGCAAGCACGTGCCCAGAGCTGTCTTTGTAGATCTGGAGCCCACAGTCATTGATGAGGTGCGCACTGGGACCTACCGCCAGCTGTTCCACCCTGAGCAGCTCATCACTGGCAAGGAGGATGCTGCCAACAATTACGCCCGGGGGCACTACACTATTGGCAAAGAGATCATCGACCTGGTGCTGGACAGGATCCGCAAACTGGCTGACCAGTGCACAGGTCTCCAGGGCTTCTTGGTCTTCCACAGCTTTGGA
>TU63429
ATCGACCACCTTGCTGTCGTGCTGTAAGACGTGCCTCCGCGCCGCACTCCTCCCTGGACCGCCGCCAAGCGAGACCACCAGCTCCTATTGAACATGcgTGAGTGCATCTCCATCCACGTTGGCCAGGCTGGTGTCCAGATTGGCAATGCCTGCTGGGAGCTCTATTGCCTGGAGCACGGGATCCAGCCTGATGGCCAGATGCCCAGCGACAAGACCATTGGAGGAGGTGACGACTCCTTCAACACCTTCTTCAGTGAGACCGGAGCGGGCAAGCACGTGCCCAGAGCTGTCTTTGTAGATCTGGAGCCCACAGTCATTGATGAGGTGCGCACTGGGACCTACCGCCAGCTGTTCCACCCTGAGCAGCTCATCACTGGCAAGGAGGATGCTGCCAACAATTACGCCCGGGGGCACTACACTATTGGCAAAGAGATCATCGACCTGGTGCTGGACAGGATCCGCAAACTGGCTGACCAGTGCACAGGTCTCCAGGGCTTCTTGGTCTTCCACAGCTTTGGA
>TU63430
ATCGACCACCTTGCTGTCGTGCTGTAAGACGTGCCTCCGCGCCGCACTCCTCCCTGGACCGCCGCCAAGCGAGACCACCAGCTCCTATTGAACATGcgTGAGTGCATCTCCATCCACGTTGGCCAGGCTGGTGTCCAGATTGGCAATGCCTGCTGGGAGCTCTATTGCCTGGAGCACGGGATCCAGCCTGATGGCCAGATGCCCAGCGACAAGACCATTGGAGGAGGTGACGACTCCTTCAACACCTTCTTCAGTGAGACCGGAGCGGGCAAGCACGTGCCCAGAGCTGTCTTTGTAGATCTGGAGCCCACAGTCATTGATGAGGTGCGCACTGGGACCTACCGCCAGCTGT

Function

symbol description
tuba1c Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Is expressed in central nervous system; forebrain; nervous system; neurons; and peripheral nervous system. Orthologous to several human genes including TUBA1B (tubulin alpha 1b).

NR:

description
PREDICTED: baculoviral IAP repeat-containing protein 7 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63428 True 578 TUCP 0.56 4 8270324 8274515
TU63429 False 519 TUCP 0.59 4 8270324 8294354
TU63430 False 352 TUCP 0.60 3 8291799 8294354

Neighbor

gene id symbol gene type direction distance location
AMCG00008659 NA coding downstream 26044 8231679 ~ 8244280 (-)
AMCG00008660 timeless coding downstream 63147 8192252 ~ 8207177 (-)
AMCG00008658 LOC103376555,LOC104932002 coding downstream 124090 8140051 ~ 8146234 (-)
AMCG00008654 NA coding downstream 195300 8037032 ~ 8075024 (-)
AMCG00008655 NA coding downstream 408788 7819151 ~ 7861536 (-)
AMCG00008669 LOC106456382,LOC108433351,LOC103385219,LOC103467923,LOC101079871 coding upstream 22273 8316627 ~ 8320297 (-)
AMCG00008667 NA coding upstream 35545 8329899 ~ 8332822 (-)
AMCG00008666 NA coding upstream 38487 8332841 ~ 8356553 (-)
AMCG00008673 NA coding upstream 162163 8456517 ~ 8457954 (-)
AMCG00008672 NA coding upstream 208346 8502700 ~ 8504696 (-)
G50657 NA non-coding downstream 132263 8137475 ~ 8138061 (-)
G50647 NA non-coding downstream 164722 8105372 ~ 8105602 (-)
G50632 NA non-coding downstream 165521 8005638 ~ 8104803 (-)
G50646 NA non-coding downstream 170879 8098772 ~ 8099445 (-)
G50615 NA non-coding downstream 285373 7984740 ~ 7984951 (-)
G50736 cdk2,LOC107683630,LOC107570445,LOC107737371,LOC107696023 non-coding upstream 63096 8357450 ~ 8360962 (-)
G50740 NA non-coding upstream 78152 8372506 ~ 8384007 (-)
G50784 NA non-coding upstream 279660 8574014 ~ 8574338 (-)
G50836 NA non-coding upstream 543005 8837359 ~ 8840655 (-)
G50915 NA non-coding upstream 849990 9144344 ~ 9149938 (-)
G50710 NA other downstream 998 8269023 ~ 8269326 (-)
AMCG00008662 NA other downstream 80147 8182929 ~ 8190177 (-)
G50656 NA other downstream 134910 8134581 ~ 8135414 (-)
G50602 NA other downstream 367718 7901335 ~ 7902606 (-)
G50476 NA other downstream 1118852 6947889 ~ 7151472 (-)
G50739 NA other upstream 73562 8367916 ~ 8371330 (-)
G50788 NA other upstream 362374 8656728 ~ 8660017 (-)
G51008 NA other upstream 1096489 9390843 ~ 9393227 (-)
AMCG00008741 hdac7,LOC107704627,LOC107752451 other upstream 2043971 10338325 ~ 10370316 (-)
AMCG00008744 NA other upstream 2266512 10560866 ~ 10603373 (-)

Expression


Co-expression Network