G50823


Basic Information

Item Value
gene id G50823
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8803206 ~ 8809391 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU63573
AGCCTCCGCAACGCtgttatatacaatttaaataccatttaaaaaagaacaagacgCTTCCTTTACTGGGCGCATCCCCATATACTGGAAACGAAACCTCAAATGTgcaagaagaaaagagaaaacaagaagaataaaaacaagcaaaacttACTTTCCCCGTGCATTGGCCGGGAGACAAGggaaGAAACCTTCGTCATGGGGGGACACCGAGCCGAGGGCGAGCGGTCTGCccggacacagacacagcagcGCGGCTCCGGCCAGGCTGAGAAAGCGCCGCGGCGGCCCGGCCTCTATATTTACACGGTCTTTTTCTAAAAGCTTGTCtcgctgtctgtctctgtctctctctctctctccccctctcctctcctctcctctcctctcccggCTCTTCCTCACTCCGCTTCGGCTGCCCCTCCTGCTACAGctcctgttgttgtttgtctttttctcccATTAACTTCCGGGGGCAACCGCCGAGCCAACCGCCACGGCCAAACTTCAAAGCTGGTTTCCGCCGTGTTGAGCTCTTAACACCCCCTGTGCAGACGCCAGAAACGCGGCGGCGCCGATGTTATCGAGGGCGTCCAGAGAGAGATGGTGCGAGTGAACCGGAGCAGCTGCCAACGTGAGAAACACACTGGGCATCCGCTCAGTAAAACAGCAGCATGCATACCCCGTCTCCCTCACATGCAGGATGGATTGCACACCGTTTGGGGTTAGGCctacagtgtgtacagtactgAATCTGCAATACTGCATGTTAGCAACAGAGGCCGCTGTTGAATTTAAAGTTATGAATAAATGTGACTACAGTtcaaatgaacaacaaaatgCGTATATCACTCGATTTTCCCAAGCGACCTTTGATTCTGGTTTCATTGTAGTCGGTCTGTAAGTCAGTATTGACCTTTAGCCTGTAATGAGGGAGAAGAAATGCACACAGTGTTCCTACTGCTCTGTGGTGTTTTAATGAGAGGACTTTTCATTATGCATCTACAAAGGCAGCAAGCACagtcttttattaaaaacaagctAAATCAATAATCCACAACAGTCATTTAGTCAACCATAAATAAAGATGGTACAATGGACCTGCTCTTTAGAGACTTGTTCATAAAATACAGAGCATCTAAACATGGTAGAATCACTAGTTTCTACTTATCAGGCTCAGGGAGAAACTCTTTCTGATTTAAAACTTTCTTAGGTATTTAGTAATCTGGCCTAAAGACTGTTGaatctgcatttaaattcaTAAGAATTCTTCACATAATTTTAAATGGATTGTAAATACTACTCCATTCACTAAGATACCAGTTCATATAACATATAATCTTAGTCAAACTAATCTGCTCAGGCTCTTCTTGTTCTTAGACATGTAatgatgaatatatattatattattgctgtgtttatgttattatattaacTGTACTCCTTTGTTTCACCCTTGTTAAAATCAAATTCATATGCATACAACTTTCACTGCCATGCTGACTTGACGCTTGTTTTTCTTAAGACACACACGaaaagaagtatgacaaaacacctgaaaaggaattaaatgcattttattttatagctttGGGTGGAAAATTTACAGAGACAAACTTCTCTGGAAATGGGACATTATATTAAAGatctgcatttgtatttagttttgctAGTGAAGGGATTAGATTCATAGTTCACAATTTCAACAACCcagcattatttgtatttaaatacagctGCCCCCGGTTTGGTCACACTTTTCCACGATCTGGGTTTATGTAAACCAGTTAGATTGAGATCAATGTTGAGGTCCCACATTAATGCTGGAACTCGCTCACAAATCTGGCACCAGGTGCTCAATTACTCCCAGTCAAACCAATAAAAACTGCATCGTTCCTTTGTATCACCTGTAGAAgttgtgaaatatgaaaattgTGCATATGAATCTGTGCCGTTTGCTGCTTCTCTCTGTACTCTccaaaaactaataaaacaaatctaatctCTCCTGATCCTTCCTGAAAGACTTTTTTTCCTGCATATTAAAAGGAAGTCAAAGTAGCAATCGTTTAAGGATTTGACAGTTAAAACTTAGGAAAGTGGAAAGATTTTTCGGTATGTGGATGAAATCAAAGTAACActaacacaaacagacatgtaGAGGTGTGGAGTAGCAATAAGGGgtctggactcctgagcagagggtcggggttcaatcccaggtgggggacattgctgttgtacccttgagcaagggaaTGTACCCagactgctccagtaaaaacccagctgtataaatgggcaaTTGTAtgtaatgtgatgtattgtctgctaagaaatataatgtataaaagaGAAAGATAGGTGTGGATTAATAGCTTCCCAAGTACAACTATAGTACTATGTGGAATAGGAAGGAGgggattgatttttttttttttctttgagaacTGAACACAGCGAGTCAGTCAaaggtcatttaaaataatttatttgtatccaaACCTTTCAGTAAGAAACAGTGGATCTGATATGTACATTACCCACCCCAAtgtgtgaaaatattaaaattatatacatacaatttacaATCTTCACAAAattcaaagaaaagcaaaaatgaaagtattttaaCCTCCGCAATGAAACGACAGCGATGCTCTAAGACATCTTAGGATTTCTACCACCACAGTATACCTCAGTGGAGCGTCAGTCAGATCCTGGATGGCTACAGTCTAACTGGGGTTTTagagtgctttaaaaaaacgacaaaaaccaaaaccaaaaccaaaaatctGACTATCAGCTGTAAAAGacaaaagctgaaaatgttCAATAGAATGAGGGAGAGCTCCTGTTGGCACAAAAACCAGAATAGAAGACACTGTAGGAGCCCAGGACTGGAGCTGGGGTCCGACACCCCTGTAGTAAAATTGCCCAAGCTTCTATACTAGATAAACAGCACCGCTTTGCAAGGGCTCACACCCCTTCCAGACCCCAATTAACAGATTGCTTTCAATAATCAGATTTAAAGCAAATGCAATTATCTAAAGTGACTTAAATAGACTATAGACACCTGGCACAGGGATACTTCCAAGGTTCTCTAAATCTACACAGAAGGGCCTCAGTTCTACCTTCCAAAGCACAGAGAAGTGGAGTGACATGCATATGGGAACATATGGGCCCTTGTATTGAGCTGGGACAAAGTGCAATGGCAGGTCTCGAATTTCTCTTTGCTCGATCATGAGAAAATTAGACAAATTAGATTGTACTAGATTATAAGAAGGGCGTCTAGAGAGAATAGGATGTCCGTTTTCACCAGGTTGCTGCTTCAGGCTGTAAACATCAATGTGAAGCCAGTGAGCGAGTTGTAGATTCTTCTCCAGCATAGAGGAAATGTGCATATTCACCTGGCAAAGGGATATGGTCAACTCGGACTCTGAAGCCACCAGCGCTTTGCTTTGGCAAGGATGAAGTCAACTTTTGTCAGGTGCATCTTTCGAATACTTATAAACATAGCCTCTGTCAAGTTCAGATCTGTAGTTTACAAATAGAGGGTGAGATTTGATTTCAATTGGCAATTTatcttaaaagttaaaaaataataaatgccaatTGAGTTATCAAACACTAACACAGAGAGATGTagacagcacacacacatcctcaGAAATGTACAGGCAGGTCATGTGTGGGACTTGCAGTGTGAAGAAATCACAATAGTAGGAAATAGGATGACTGATTAAACCaatggggaaaaacacaaacaagaacaatGTAAACATGGGTAAAGCTTACCGACAAACACGTCTGTGGATCAAGCATGGCAGCCTGAGCTAAACTTGCATGATCTGAATGTGCAAagcaacaattaaaatacataatagtacaagtaataataataataataataatgaatgggGGATACATGCATAGTAGGCACATACATAAAATGATGGCTTTTGgttttcagcatttaaaaaatatgtatttgatgcGCCTTACCTTAAAATTGTATCCTTAAATATGTGCATCCAAATTATGAGAAAGGTGTTTAAATTGTGATTGAAAACAGTACACAGCAAGTAAACTGGCATGATAGAAGCTAAATCTTGCAAAGAGCAAGAATGTAAGGCAGTTAAAATAGGATCGGGAGGGAAAGGGTGATCAAGTAATGTGATTGATTAAAACTTCAAACTGGGGTGATGGAATTGAATTCAGACGCTCAATCAAGACAGacggattaaaaacaaaaaaaaagttgtttaaacatttatagcagcaagatttttttatatatatataaaaaaaggtaaaatcagcacagaatacatataaaaagacaaatgccAGAAACCAGAAATAATCCTAATCAGAGCACTCAACACTGCAAACACTATGTGgataaaactaaaccaaaacataagacaaaaataacagtaataaaaataaatgtatctcaACCTTGTAAACATTTCATATTCACCGACTGCATGCTAATTTCTTTCAGTTTGCACTTTGGTAATCCTTTACATTCACACCCAGTTCGGCTATCTTTAGACACTGAATACTTTAGGGCAGCAATACTCACTGGATATGGGCAGCTGGAGAATTATGCTTGTTCATGAGAATGTAAGAACCAGAACCACAGATAGATCAATTGCTTTCTTGGCATGGTATTAGAGAGTGGTCCTAAGCCCGGAAATCCTTATCCAGAATTAGCATTTTAAAGACGGTGAATTGAAAAGTTTTTCAATGAAATGCTGCAACACATGCAATTGATAAGTGATGCAGAAAGATGCCTTTACAATGTGTTGGTCACacaaaagggggaaaaaggtTGGGGTCCGTATAAATGCCAGCACCTTCTCCTAAACTTCGAGGGCCGAAAACGAGTTGCCAAAGCACATGAAAGAACTAATGCATCTCCCTGGCAATCGATGCTCGAGCTGATGATTCCTGAGTTGGGGCTTCAACTTGCCATGCCTAAACTAGTGGGGGGAACTTACCACTGCGACACAGGTGTCACACTTTTAGAATTCCCCATGACGTTTCTATCCACTTAGTGCCAGAAAGCTTCTCTCAAAATGGATATTGAATAATCTCTACCAGGAAGCTTAAACCTCGCTTCTGGGGGTTACCCCTGGGTCTCGTTTGAATTgcccattttaaattaagctgatacaaattatacatttgaaaaactggCCATTGACTTTCCTTAACTAAATTACACTCTTAAAACATGGATGGGGTTAGAAATACCCTCTACCAAGAGACTGCTTTCTGAATCATCAAGGTATATTGATTAAATAAGCAGACATGCTTATAATGGGGTTTTATATTGTGGGAATGAAGGATGGACGGAGTAGTTTTTCACTAATCTGAAGGACTTTTCAGGTTATAAATAGGCCTAATTAatacaatacttaaaataaGTCCAATAAATCAAGATCCATTCATGGGTTGAATACGTAACTCTATGCagagacaacaaaataaaaatctcaaaAGGATCCAGACAAAAGGAGATGCACCAGACCCCAGGCATGAGAAAACATGAAAGGCAAATGAACATTACTGTATACATTGCTCTGAAGCCCTGTGCTATCCAGCTTGTTTCCGGGCCGAATGCTAAAGATCCCATTCAGAATTGGCAAGACACTCTGATGCAGAAGGGTGCCACAGTAGATATGGAAAAAGGCCACTGGCAGAAAGTTTGGAATTGAGGAGTTGCCGCAACATCTGCAGTTATAAGATAGATAATAAAACAGGGTACTTAAATCAATAAGTAAAaatgactgtttttattttattttttccgtCTCCCCATTCAGGCGTTGCATCAgcaaaaatggttaaaaaaaaaatggtatctGGTTTTAATGTGGGGGCACAATTTTTGTACCTCAAAAACCAAAGCCTTTTTTCGGTTCCCTAGATCAgaggtgtcagactccagtcccaAAGGGGGCACAACAAATGAGATTTCAGCATCTGGACAGAAGTTTCAAATCATCCACTTAATCATTAGACCAATGAAGACAAGACGAGAGGTgggctgaaaaaaataaaaacaggagacattcca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63573 True 6091 lncRNA 0.40 2 8803206 8809391

Neighbor

gene id symbol gene type direction distance location
AMCG00008684 ormdl2,LOC104952346 coding upstream 18327 8780753 ~ 8784879 (+)
AMCG00008679 NA coding upstream 31358 8764331 ~ 8771848 (+)
AMCG00008676 NA coding upstream 75475 8724073 ~ 8727731 (+)
AMCG00008677 NA coding upstream 103425 8694842 ~ 8699781 (+)
AMCG00008675 NA coding upstream 109376 8680333 ~ 8693830 (+)
AMCG00008683 LOC106581923 coding downstream 16656 8826047 ~ 8840517 (+)
AMCG00008685 NA coding downstream 56888 8866279 ~ 8881168 (+)
AMCG00008688 NA coding downstream 93823 8903214 ~ 8913342 (+)
AMCG00008695 NA coding downstream 313850 9123241 ~ 9132238 (+)
AMCG00008701 coq10a,LOC102221461,LOC106917050,LOC102797363 coding downstream 366229 9175620 ~ 9184530 (+)
G50757 NA non-coding upstream 214078 8572729 ~ 8589128 (+)
G50698 NA non-coding upstream 533880 8269007 ~ 8269326 (+)
G50692 NA non-coding upstream 556374 8246577 ~ 8246832 (+)
G50668 NA non-coding upstream 612421 8189825 ~ 8190785 (+)
G50627 NA non-coding upstream 728202 8068760 ~ 8075004 (+)
G50878 LOC100846954 non-coding downstream 185145 8994536 ~ 8994903 (+)
G50929 NA non-coding downstream 382386 9191777 ~ 9192377 (+)
G50930 NA non-coding downstream 383139 9192530 ~ 9192919 (+)
G50931 NA non-coding downstream 383624 9193015 ~ 9193685 (+)
G50932 NA non-coding downstream 385013 9194404 ~ 9194638 (+)
G50747 NA other upstream 136658 8450166 ~ 8666548 (+)
AMCG00008664 Tuba1a,LOC107714908,LOC108433351,LOC103385219,LOC108255233,LOC108275946,LOC105930792 other upstream 478428 8278853 ~ 8324778 (+)
G50583 NA other upstream 863435 7933829 ~ 7939771 (+)
AMCG00008639 NA other upstream 1487356 7296886 ~ 7315850 (+)
G50448 NA other upstream 1785081 6957611 ~ 7018125 (+)
G50900 rnf41,LOC107701697,LOC107756409,LOC107723732,LOC107671855 other downstream 272436 9081827 ~ 9087967 (+)
AMCG00008696 nabp1,LOC106565411,LOC106575791,LOC107675336 other downstream 307284 9116675 ~ 9122812 (+)
AMCG00008710 NA other downstream 500695 9310086 ~ 9316151 (+)
AMCG00008707 tfcp2,LOC107715039,LOC107671887,LOC106572516 other downstream 545701 9355092 ~ 9379579 (+)
AMCG00008725 NA other downstream 1106103 9915494 ~ 9937752 (+)

Expression


Co-expression Network