G50836


Basic Information

Item Value
gene id G50836
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8837359 ~ 8840655 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU63589
TGGAAGCAAAGATTTAAGAAGATTAAGACTAAAGAGTCTGTTTGTCAGCAGAGGGCACAGGGGAACACAAAATACTGTATGCCATGCACAtgtaaaccataaaataaacttttattgaaaattaacaaaataaataatctactGTACAACATAATAAAATCAAGAGGTCATCTAATGCTTGCGAGCCGGAGGATTTAGGCAACTAAGGATGCACTGACAGGTCTAGCTCCCAAGGGGGCACTCTTGTGAGAATCTCCACACCTTTATAAAACTCAATCCCACAGGTCTGTCAAACTCCTGTCCTGTTGGACCTCCTTGCTTTCTCGACCTGATCTCTTTATGTTATCAAATCTATTGTTTACTATTTTCAGCCCATTCTGTCCTTCTGTTCCCAAAGCCAGTGAAGGTGTCACTCTTGCCTGTGTTTGTAGATACagtaatttgaatgtattgcagTCTCACTACTGGTGCTGGAGAGCCATGGTCCTGCAGCTTCAAATCGATACCTTCATCCTCAAGGGGTGGAGACCTTTTGGTTTTATATAAGTTAAACTGTTAGTTTTTCTCTTTGAGGATCTGCTCAAAGTACTTACCCACATTGAAGTCAATGCACCAGTTAAAGAATGAGATTTATATACTGACATTATTCAATTCTTAAAGAGCTCTCCTACAAATGGCTCCTGGACACACTGCTAATTGAAACCAATGGGCAGAATTAATAACATGCCTGACGTTTCAAGGTGGAATGAAATCTAGCAGGCTCTTCAGCTTTCTTTTGATGTTGTGTATTTAGAGACCACTGCATCAGCTCCAATCAGCATGTGATAATTTCCCCTCTACTTAGCTGCTCTAATTAAGTCTAATTTATCACTTCTCTCCAGGTGGCAACATTTTCTGGGGGTGCTGTACTGTATCTTGAGCCAAGGGCATATTTTAAGCTATcagctgatttttattttaatagaatttcaaaatattcagtaagctttgaaaaaaataattctgttaATTTAGTAACTGAGACACCGTGGCTCTCCAGGGCCAGAGCTTGACACCTTGATTGTGGTTCATTCCTTAAATGATGTCACTGAGTTGTCCTTTATGAGGGTGTTATTGTTTCTGGTGAGGGCTGTAGtactttaaatcaatatttgcagCCACATCATATTAGAGATAAGAGAAgcggaaaaaataaataaatcaaggatTGAAGTTGGACACAACCATTTTAGGTCACTCCCTCcacccccacaacacacacacatacacccccacacacacacacaaacatcccCTTTGTGGGCTAAAGACCTGTATCAGCCAAGTGGGCTAAAACTACTGTAGTCAACAGTTCAGACACAAAATGGGTTGCATAATTTCTACATCATACTACAAAAATCAAccgtgaaacacacacacacacacacacacacacacaaatagatacACTGTATAAATAACTGCAGGAATAGAGGAGGCAAACGCTACCCAAACTGCCACCATTGACCGCTCCTTGAGATAGCTTTTTGACTGATTGATCAGTGTACGACTGTGATTCCCAGATTTCTGGATTCTGACAGTGAGGACTCGATGGACGTACCGGGCAGGGAGAGCGGCTGGTCAACACAGCAGTGAAGTTACACCAGATTCCCCAAAGCCCGGAGGCTCTGAATACCATGTGTTCGGATGCTGGCCTGTTTGGGGAACCCAGCTCTTGCATTCCACCTATCTGTCTCTGCTGGGCTTCCCTCCTCTGTCCTTAATGCACGGAAAATCCAGGGAAACCCTCCCTTCCACAGTGATCAAAGTAGCTGATTCCTCTGTTGAAGCCCCACTTCACTGCTACAAAGTAGAGATGCATTTACAATATAGATTTTGTCTTGCACTTAAACAGTACATTACCTTGTTTTTTCCACACAGTGTCCAATGTTTTTTTGCAGCCACTGGGCATTACTACACTTCATCGATGATGCTATATGTTGTCACGGCAATCGTCTGTAAGGGTAGTACTGAATAGCAAAGGTCTGTCTCTCCCGTCTCTCCTCATCTCCCTTCCATCGCCGCAGTCTTCCCTTTTCGAGAATCCCAGTCACTTCCAGTCTCTGATTCCGGCTGTGGGATCAGACTCGAGCACCCCGAGAGCACCTTGTCCTCGGCTCTCCCCGAAACACGGAATAAACAAACCGACCGGCCGACCGACCAGATGAACGAACAAACGattgaaacaaaacacttaaaaaaaaaaaacaacaagaagaaaCGTTCTTGTTCTCCGCCCGGCTCACTAAAAACATCCTTCGTCCCATTCCTGTGAGTTCTGACTCGGGACGCAAGGAGAACGAAAAGATAgcaccaaaaaataaacaaaccaccaacaaccaaaaacagaaaatataagataaatcagaaaattaaaaataaaatcccctcccctcccccactttTAAAGTCTGGTCAAGGGCTGCAGTGTGGAGAGGATAAGGTAGGTTTTGGCTAAAACGGAGATAGGAACTTATTGCTGGTGGGGAAgggagtggaggaggaggaggaggaggaggaggggaatcGGAAGATGGagggtgtgtttttatttcccactGTGATCCGAGTCTTCTTTGGTGCTGCAGGAGCTGCTTCTTCGGCGCTGGGACGGGCCCCTGTCGCTCACCCTGTCGTCCAGCTCTGCAAAGAAACAGCCAGTGCAGGTGATTAGCCTAGAGGCAAAGGAAGACAGTGTGAGGCGAGGGGGGCAGATACACATACAAGCAAAGCAGTCTGGGGGGTTGCCGAAGGCCTGTGTGCAACAAATTAGTTCTGGATTGGAGgggtgtccgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgcgtgcatgttgTGTATGCCTCCTCATACACAGTCTTTAATCACACTGGTGCAGGCAAGATTTCAAATGAGCTACTGAGCAACCAAAGaactaaaacaatgtataagtgGATGTGTACATGCCTTATCCCATTAGAAATCTTTGCACCGTATGGCCTCTCTTAAAAGGGTAGTAGCAGTGTGACACAACGCCAGGCTCAAAAGGGAGCATGCCCTAACACAGTATCTGCCTTGAGTTTGTGTACCTTACAGGGCCTCTGATGTAGAAGGCAGATATTTAGACTAAGGAGTTGTTGAGATACTGGATAAGTGTACTGCATGTGCAAATGGGTAAGGCAGGTTGAAA

Function

NR:

description
PREDICTED: C-type mannose receptor 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63589 True 3212 lncRNA 0.44 3 8837359 8840655

Neighbor

gene id symbol gene type direction distance location
AMCG00008687 NA coding downstream 17913 8805776 ~ 8819446 (-)
AMCG00008686 dnajc14,LOC107737354,LOC107683641 coding downstream 36035 8791263 ~ 8801324 (-)
AMCG00008680 pan2,LOC107671829 coding downstream 80927 8730725 ~ 8756432 (-)
AMCG00008682 NA coding downstream 120033 8701778 ~ 8717326 (-)
AMCG00008681 NA coding downstream 178799 8635800 ~ 8658560 (-)
AMCG00008689 NA coding upstream 41839 8882494 ~ 8892523 (-)
AMCG00008693 NA coding upstream 56082 8896737 ~ 8901751 (-)
AMCG00008691 NA coding upstream 73283 8913938 ~ 8916096 (-)
AMCG00008690 NA coding upstream 100845 8941500 ~ 8941823 (-)
AMCG00008692 NA coding upstream 117623 8958278 ~ 8967884 (-)
G50784 NA non-coding downstream 263021 8574014 ~ 8574338 (-)
G50740 NA non-coding downstream 453352 8372506 ~ 8384007 (-)
G50736 cdk2,LOC107683630,LOC107570445,LOC107737371,LOC107696023 non-coding downstream 476397 8357450 ~ 8360962 (-)
G50711 NA non-coding downstream 512584 8278752 ~ 8324775 (-)
G50657 NA non-coding downstream 699298 8137475 ~ 8138061 (-)
G50915 NA non-coding upstream 303689 9144344 ~ 9149938 (-)
G50999 NA non-coding upstream 535917 9376572 ~ 9379452 (-)
G51002 NA non-coding upstream 540096 9380751 ~ 9381754 (-)
G51004 NA non-coding upstream 547603 9388258 ~ 9388608 (-)
G51005 NA non-coding upstream 548169 9388824 ~ 9389048 (-)
G50788 NA other downstream 177342 8656728 ~ 8660017 (-)
G50739 NA other downstream 466029 8367916 ~ 8371330 (-)
G50712 tuba1c,LOC108255233,LOC108433351,LOC103467923,LOC106456382,LOC102313992,LOC107707018,LOC107557552,LOC105930792,LOC107697948,LOC102193505 other downstream 543005 8270324 ~ 8294354 (-)
AMCG00008668 LOC106456382,LOC108433351,LOC107714908,LOC103467923,LOC108433416,LOC103367934,LOC102193505,LOC108255233 other downstream 543873 8281215 ~ 8293486 (-)
G50710 NA other downstream 568033 8269023 ~ 8269326 (-)
G51008 NA other upstream 550188 9390843 ~ 9393227 (-)
AMCG00008741 hdac7,LOC107704627,LOC107752451 other upstream 1497670 10338325 ~ 10370316 (-)
AMCG00008744 NA other upstream 1720211 10560866 ~ 10603373 (-)
AMCG00008748 LOC107666380,LOC108429286,LOC107705699,LOC107681386,LOC107559866 other upstream 1830294 10670949 ~ 10718201 (-)
G51241 NA other upstream 1835101 10675756 ~ 10712485 (-)

Expression


Co-expression Network