G50900 (rnf41,LOC107701697,LOC107756409,LOC107723732,LOC107671855)


Basic Information

Item Value
gene id G50900
gene name rnf41,LOC107701697,LOC107756409,LOC107723732,LOC107671855
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9081827 ~ 9087967 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU63666
ttgtttttatacatttttttatcctGTACAATTGTAGAGTATTTGTTTCCCTCATTTGTTTGTAATGAAGCACGTACATAAGGGACACATACCGGGATGGTGCAGTACAAAATCTTTATGTAAacagtcactttttttttttcttccttttccaaTTATGAGTACAACAGATTGACAGTGTACAGGAGAAGAAGGGGGCTCGTGCATGGCTGCCAGAGCTGCGCGAACCTGTCGAGGAGCGGGAGTAGTTGCTCGCACTGTAGGTGCTTGTAGGTGCTGTAATCCTGGTTTCAACAGAGGAATCGGGATTTAACATCAATACCTACGAGGGAGTCACACGAAAGGAGGGCCACTTCAATACTGCAGCGGATTAGGATCTccaattaaaagaaagaactCAAAAGTGTGTTGAGATAAAGGTAGTCTAAAAGGAGTAGAGCATATCACACTGTAGCCAAGTGCATCTTCCTCTTTGCTTTCGCTAGTGTTGTTTTGGGGGGGCGATTGTTTACATTTGGCCCCtctctccattaaaaaaaacaaacaaaaacttattAAATCAAGCCAGGGGGAAGCAAAAGGGTGTAACACCAGAGGATGTGCCGCAAAGGGGAAGAATTTGGGGGTGCACTCCTATACACGCCCTGTTGTATTCTGTCATTCGCCCTGGGGGTAAGGGGAATGGGAATACCGAGCAAACACGTCAAATAAGTAGCAGGAGTAAGATTTTAATCAAATgagatttatataaaaaatgtataaaaggaaaATTCAGCGGATATCTGTGAATACCGCTACTCCCTTAAACGAAGGGAAAACTTGTGTAGACTACTTTTTTATAGTCCAAAGTGTTCAAATGCACCAACTTGCACTATTTCACCTCCCTTTGGGACCACTCTGTGGGGATAAACACGTTTATGCAGCTCTAGCACTCACACAAAATAGCTttttccccatctccccccaacTTCACAACATAccactcccccccccaaaaaaaacaaaaaaaaaaacaaaacaaaaacacacaaacaaaacataaaatgaaaaatacaacaaataattcACCTGCTGAACAAGCCAAATGCGGTCAGACCAGATACAGACTACTTCACTGCACAAGAACAGGGTAAAAACTCACAACAGGAACAGAGCTATCCATCATGTCTATATGATTTAGgggggacaaaaaaaataaaaaaatacaaaatcaacaacaaaaaagtaaaaacaaacagacaaagcaATGTCTTCCGGTTGCAACAGAGAACTCAAACAAATCATCgtcataatacaaaaatgttgctTGTAAGTGCTCTTTTGAATATAATATCCATTGTATTTACATCaaataacataagaaaataataataataaaaataataatcccagATAATTTCACCCATACTCTGTTTGGTTTTGCTGAAGAGGTCAGTGACAGTATAGGACTGGTAATACAAACTGCCATGAGCAACACACTCCACAGTGTGGTATTTGGCccagatcagatcagatcatCACACTACCAGTCCCAATACTTTCATTGGAAAATCAAAGTGTTGGGATAGGGGGGGGTAACCAGTTAGTGGGCCACACTGAAAAGGAGTCATTGTGTCGATTCTCAAACCGAACCCCTCTTTTGCGATCCTCCTCGCCGTATTCCTCAAAACAAAATCGACCACAGTGCACTGCATCCAGAAaatcatagaaaaataaactccAAAGGCTTATTGTGGGCACACTTGGCTGCAGCTGCGGAGAGAGAAGGCCGGTTAcatttagtgttttattgtttgtttgattttctctATAATTTtcatacattacttttttttttggttcattttttccgtttttttttttttttttttactaaaattgGGTGTTGAGAATTGTCCactttgcttttatatttttttaattgctccTGTCCACACGGTTTTCAAAACGGTCCAAGAATTTGAGAGTTTTGTCGTGCCACCCCCAGCCTCCTTGTCTTTCACAGCTCTGCAAGGGAAGTGGAGAAGGCGAGGGGGGCATGAGGATGGGTTATGCGTGATGACGTTCTGACTGtccaggggtgtgtgtgtgttattttcttcGTCCTTTATCGCTCTTTAAGGTgactccccacacacacacaccccagcacacacacacacacacacacaccccctccaCCCATTATAGGATCTCCTCCACTCCATGTGCGAAGATCATGACCAGGCCGGGCTCCAGGATCATGTCCTCGCCCATGTGTTGGTTCTCGCAGGCCATCACCACCACGGCCTGCTTGCCCGGGATGCGCTTGGCCACGTAGTTCTCGTAGTAGCGCCGGTTCATCTGCCGCGTCTCCAGGGTGGCCagcccctggggccagttgcGCTCGTGGGCATTCTCGATGAGGTCGTTGACGATGGACAGGGGGCAGCCGCTGTCGATGAGGGAGCGCTTGATGACAGCCTGCAGCACGGCGTCCGGTGTCGAGATCATGCCTCCCCAGCGGGTCACCCTTGCTGGCTGAAGGGAGTTCACCCACCTGGATTaagaaataatttgttttgatgtaggCCTAAGACTGAGTATAGA

Function

symbol description
rnf41 Predicted to enable ubiquitin protein ligase activity. Acts upstream of or within melanocyte differentiation. Predicted to be active in endoplasmic reticulum tubular network. Is expressed in several structures, including germ ring; muscle; nervous system; neural crest; and optic cup. Orthologous to human RNF41 (ring finger protein 41).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase NRDP1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63666 True 2589 TUCP 0.44 2 9081827 9087967

Neighbor

gene id symbol gene type direction distance location
AMCG00008688 NA coding upstream 168485 8903214 ~ 8913342 (+)
AMCG00008685 NA coding upstream 200659 8866279 ~ 8881168 (+)
AMCG00008683 LOC106581923 coding upstream 241310 8826047 ~ 8840517 (+)
AMCG00008684 ormdl2,LOC104952346 coding upstream 296948 8780753 ~ 8784879 (+)
AMCG00008679 NA coding upstream 309979 8764331 ~ 8771848 (+)
AMCG00008695 NA coding downstream 35274 9123241 ~ 9132238 (+)
AMCG00008701 coq10a,LOC102221461,LOC106917050,LOC102797363 coding downstream 87653 9175620 ~ 9184530 (+)
AMCG00008700 NA coding downstream 182395 9270362 ~ 9282607 (+)
AMCG00008706 NA coding downstream 202721 9290688 ~ 9309599 (+)
AMCG00008708 NA coding downstream 250864 9338831 ~ 9350517 (+)
G50878 LOC100846954 non-coding upstream 86924 8994536 ~ 8994903 (+)
G50823 NA non-coding upstream 272436 8803206 ~ 8809391 (+)
G50757 NA non-coding upstream 492699 8572729 ~ 8589128 (+)
G50698 NA non-coding upstream 812501 8269007 ~ 8269326 (+)
G50692 NA non-coding upstream 834995 8246577 ~ 8246832 (+)
G50929 NA non-coding downstream 103810 9191777 ~ 9192377 (+)
G50930 NA non-coding downstream 104563 9192530 ~ 9192919 (+)
G50931 NA non-coding downstream 105048 9193015 ~ 9193685 (+)
G50932 NA non-coding downstream 106437 9194404 ~ 9194638 (+)
G50983 NA non-coding downstream 265011 9352978 ~ 9354405 (+)
G50747 NA other upstream 415279 8450166 ~ 8666548 (+)
AMCG00008664 Tuba1a,LOC107714908,LOC108433351,LOC103385219,LOC108255233,LOC108275946,LOC105930792 other upstream 757049 8278853 ~ 8324778 (+)
G50583 NA other upstream 1142056 7933829 ~ 7939771 (+)
AMCG00008639 NA other upstream 1765977 7296886 ~ 7315850 (+)
G50448 NA other upstream 2063702 6957611 ~ 7018125 (+)
AMCG00008696 nabp1,LOC106565411,LOC106575791,LOC107675336 other downstream 28708 9116675 ~ 9122812 (+)
AMCG00008710 NA other downstream 222119 9310086 ~ 9316151 (+)
AMCG00008707 tfcp2,LOC107715039,LOC107671887,LOC106572516 other downstream 267125 9355092 ~ 9379579 (+)
AMCG00008725 NA other downstream 827527 9915494 ~ 9937752 (+)
AMCG00008727 NA other downstream 839420 9927387 ~ 9931515 (+)

Expression


Co-expression Network