G50931


Basic Information

Item Value
gene id G50931
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9193015 ~ 9193685 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU63705
TCCTCCTGATTCACTCTTTACTTGACTTTACTAATCTCAAATCTCTAGTTTTAACTCGCAGAAGACCTTGGAACACTATGCTTTCTTTTTGGCAGAATATGGAATGGCATGATGGGATAGAAAACAGTCCAGAGGGAAAAATGCATACTACGGCATAAATGAAGGGTTTGATTTAGAAGCATTGGGGGGTGGGATAAATTGTGTTAGTGTGGGAAAGGGCCATTTCTGAATCACATCCCTATCAATGTGCACAGTGTGGCCGTTTTAGTACAGAGCAACAGCTCCCTCTAGACACAATGTATAAGCTCTCGCTACAGTACTGGGCTGAAACAAGGATACGGTGCTGAAGATGCATCTTACCTGCACTCCTCTCGGTTTAGCTCCAGTCTTCTACAGCAACCCTCTCTGCAGGACTGATGAACACAAAACTGAAGCCCTGTCTCTCCTACTTTCCCTCTCCAAAGCTTCCTCCTCTACACTGCAGGCACCCAGAAGTCTATCACCCAGGAAATGTGCCAGCTGAGTCCAGTGCACTGTTTAATTGGACCAGCCTTCCTGGGATTGACCAACCCGTTAAACCCCTGCTCACCATCCTGTCCGGTCACAGCCGGGTGTGAGATCAAGATGGTGGACGATGGCTTTCAGTCAGCCGGTAGCTCCGACAGTACCTT

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63705 True 671 lncRNA 0.48 1 9193015 9193685

Neighbor

gene id symbol gene type direction distance location
AMCG00008701 coq10a,LOC102221461,LOC106917050,LOC102797363 coding upstream 8485 9175620 ~ 9184530 (+)
AMCG00008695 NA coding upstream 60777 9123241 ~ 9132238 (+)
AMCG00008688 NA coding upstream 279673 8903214 ~ 8913342 (+)
AMCG00008685 NA coding upstream 311847 8866279 ~ 8881168 (+)
AMCG00008683 LOC106581923 coding upstream 352498 8826047 ~ 8840517 (+)
AMCG00008700 NA coding downstream 76677 9270362 ~ 9282607 (+)
AMCG00008706 NA coding downstream 97003 9290688 ~ 9309599 (+)
AMCG00008708 NA coding downstream 145146 9338831 ~ 9350517 (+)
AMCG00008712 NA coding downstream 195726 9389411 ~ 9391756 (+)
AMCG00008711 NA coding downstream 206801 9400486 ~ 9408758 (+)
G50930 NA non-coding upstream 96 9192530 ~ 9192919 (+)
G50929 NA non-coding upstream 638 9191777 ~ 9192377 (+)
G50878 LOC100846954 non-coding upstream 198112 8994536 ~ 8994903 (+)
G50823 NA non-coding upstream 383624 8803206 ~ 8809391 (+)
G50757 NA non-coding upstream 603887 8572729 ~ 8589128 (+)
G50932 NA non-coding downstream 719 9194404 ~ 9194638 (+)
G50983 NA non-coding downstream 159293 9352978 ~ 9354405 (+)
G51000 NA non-coding downstream 198342 9392027 ~ 9398369 (+)
G51065 NA non-coding downstream 447071 9640756 ~ 9715167 (+)
G51094 NA non-coding downstream 598453 9792138 ~ 9794219 (+)
AMCG00008696 nabp1,LOC106565411,LOC106575791,LOC107675336 other upstream 70203 9116675 ~ 9122812 (+)
G50900 rnf41,LOC107701697,LOC107756409,LOC107723732,LOC107671855 other upstream 105048 9081827 ~ 9087967 (+)
G50747 NA other upstream 526467 8450166 ~ 8666548 (+)
AMCG00008664 Tuba1a,LOC107714908,LOC108433351,LOC103385219,LOC108255233,LOC108275946,LOC105930792 other upstream 868237 8278853 ~ 8324778 (+)
G50583 NA other upstream 1253244 7933829 ~ 7939771 (+)
AMCG00008710 NA other downstream 116401 9310086 ~ 9316151 (+)
AMCG00008707 tfcp2,LOC107715039,LOC107671887,LOC106572516 other downstream 161407 9355092 ~ 9379579 (+)
AMCG00008725 NA other downstream 721809 9915494 ~ 9937752 (+)
AMCG00008727 NA other downstream 733702 9927387 ~ 9931515 (+)
AMCG00008749 krt8,LOC108429286,LOC107705699,LOC107666380,LOC107681386,LOC107559866,LOC108411779,LOC106935308,LOC103152763,LOC102227940,LOC106915440 other downstream 1498692 10692377 ~ 10771675 (+)

Expression


Co-expression Network