G50983


Basic Information

Item Value
gene id G50983
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9352978 ~ 9354405 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU63764
ACTGACTCAGCTGGAGGTGATTTTATGGACTGAAATcgtatttaatttcattttttttggttgtttttgttaactTGTGTTAGCTTTTAAAACGAACAAGGCAAACATCATGCTGGCCACAGGAagaatatataagaaaatacacacatacactttggATAtgttccaaaatatatatagcaatcCAGAATCCTGGTTTGTGTTGATATTGGTTTTTGCTGCTTTTTTAGAAACACAGAAGGCCATATTTACAAAGCACAGGCCTTCATGCATACTTCCtcccaataaaaaaagaaaacaaacacagagtagTGTCCAATAAACTTTTATGAGACTTATTTAAGAGCCCtgattatcttattttattttccccctcccTTTATGAGTAAGCGTGGGGAAGTTTCAAAAGTGGGaggaaagtattttattaatgtggcCAAGGGAGTAGGTTGGGGTTTAGAATATAAAGCTCTTATTCAGATACTTTCCAGTAGCTCCAGGACTCTTAAAGAGGAATTCAATTAAAAGACCTGTTACCAGAGTAACTCAGCGTTCACAAATTAGAGCAGTTGGAGCTCTCTTAACTCGGCTACTTTCTCCTCCTGAAATAAACTGTGTATTACATTTGACCCACAGGTTTAAATCCCAGGAGGTTGGTGTTGTGTAGAATAGTGGCATGAGGACTTGGTGCTAGAAACAATACACACCCTCTGTTGATGTTGCAagcttaattatatatacagattgaCAGCATTTAATGCCTTAAAGAGACAATTACACCACATTTCCTTCTGTTAGTTTCTGAACAGTGTGCATGTCATCCCAGCCATCCTAATGTTATTTAACATCCTAAGtaaggacatttattttaaatggtaaaatgtttaaagtaacTTGTTTTGTGTGCTTCAGAATAGAGGTCTGGATTGCACATTACAATTAAGATACACTCACCAACTCTTAACTCAATAGTTAAAAGAGTTGGCACTTACACTGAGGTGTAGACTGGTATAACCGTTAGGATcctgttaattaatttacaattgtAGTTCAGGACAGGACCAATgcagtgtgttggtgtgtgtgagagataaGACTACCCTTTTTTCCTTTATAGTGTAGTGGTTTCTTGACAGGTTGCAATGCCTGTACAGAATGCATTCTTTTGGAGTGACAGTTTATCCTGTTGTAAACAAGcaagcagacaaacacacacacaaacagacagctttatatataaaactaattatatttattttattaatgttatataatatttttaaaggttcTAGTTGCTCCCTGTTTGGGTACACATTggttatgtaaaaaataaaaatatgaattaataaataataattaataacatgcatacatatatacatacatacatagatacctGTGTCAGGTTAAAGATGTATCCTATAATGT

Function

NR:

description
PREDICTED: DNA topoisomerase 1-like

GO:

id name namespace
GO:0071840 cellular component organization or biogenesis biological_process
GO:0016043 cellular component organization biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63764 True 1428 lncRNA 0.35 1 9352978 9354405

Neighbor

gene id symbol gene type direction distance location
AMCG00008708 NA coding upstream 2461 9338831 ~ 9350517 (+)
AMCG00008706 NA coding upstream 43379 9290688 ~ 9309599 (+)
AMCG00008700 NA coding upstream 70371 9270362 ~ 9282607 (+)
AMCG00008701 coq10a,LOC102221461,LOC106917050,LOC102797363 coding upstream 168448 9175620 ~ 9184530 (+)
AMCG00008695 NA coding upstream 220740 9123241 ~ 9132238 (+)
AMCG00008712 NA coding downstream 35006 9389411 ~ 9391756 (+)
AMCG00008711 NA coding downstream 46081 9400486 ~ 9408758 (+)
AMCG00008715 NA coding downstream 134090 9488495 ~ 9525687 (+)
AMCG00008716 NA coding downstream 173493 9527898 ~ 9529672 (+)
AMCG00008714 NA coding downstream 177386 9531791 ~ 9537457 (+)
G50932 NA non-coding upstream 158340 9194404 ~ 9194638 (+)
G50931 NA non-coding upstream 159293 9193015 ~ 9193685 (+)
G50930 NA non-coding upstream 160059 9192530 ~ 9192919 (+)
G50929 NA non-coding upstream 160601 9191777 ~ 9192377 (+)
G50878 LOC100846954 non-coding upstream 358075 8994536 ~ 8994903 (+)
G51000 NA non-coding downstream 37622 9392027 ~ 9398369 (+)
G51065 NA non-coding downstream 286351 9640756 ~ 9715167 (+)
G51094 NA non-coding downstream 437733 9792138 ~ 9794219 (+)
G51129 NA non-coding downstream 618891 9973296 ~ 9975207 (+)
G51134 NA non-coding downstream 624993 9979398 ~ 10071199 (+)
AMCG00008710 NA other upstream 36827 9310086 ~ 9316151 (+)
AMCG00008696 nabp1,LOC106565411,LOC106575791,LOC107675336 other upstream 230166 9116675 ~ 9122812 (+)
G50900 rnf41,LOC107701697,LOC107756409,LOC107723732,LOC107671855 other upstream 265011 9081827 ~ 9087967 (+)
G50747 NA other upstream 686430 8450166 ~ 8666548 (+)
AMCG00008664 Tuba1a,LOC107714908,LOC108433351,LOC103385219,LOC108255233,LOC108275946,LOC105930792 other upstream 1028200 8278853 ~ 8324778 (+)
AMCG00008707 tfcp2,LOC107715039,LOC107671887,LOC106572516 other downstream 687 9355092 ~ 9379579 (+)
AMCG00008725 NA other downstream 561089 9915494 ~ 9937752 (+)
AMCG00008727 NA other downstream 572982 9927387 ~ 9931515 (+)
AMCG00008749 krt8,LOC108429286,LOC107705699,LOC107666380,LOC107681386,LOC107559866,LOC108411779,LOC106935308,LOC103152763,LOC102227940,LOC106915440 other downstream 1337972 10692377 ~ 10771675 (+)
AMCG00008752 LOC107666323 other downstream 1474163 10828568 ~ 10846436 (+)

Expression


Co-expression Network