G51007 (csrnp2,LOC106567166,LOC107594006,LOC107715040)


Basic Information

Item Value
gene id G51007
gene name csrnp2,LOC106567166,LOC107594006,LOC107715040
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9389784 ~ 9390161 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU63793
CTTCAGCTTGCGGGCATTGAGCTTCTCCTGGCGCAGGTGCTGGCGCAGGGCCTGGTGGTGGCTGCTCTCCTGCTCGCGGGCGAACTCCCCCAGGGTGTAGCGACGGATGGCGCTGTGGTGGCGTGCCATGCCCAGTGAGCTGCCACCCTGGCTGGGCACACTGGTGAAGCCCTGCCGCCGCGAGAAGTAGTACACAGTCACTGCGTCGAAGCGCACACTCTTACGGCCAGGGGGCTTCTGGCGGCGGAGGATAGACGTGGCTGCAGGGCGAGAAGACAGAAGAATGGGAGGCAAAGAgtgaagggagagggagaagagagaaaagaggtgggagaagaaaaaagatttaaaatgagtgaatgtgtatgtttgtgcaca

Function

symbol description
csrnp2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nucleus. Orthologous to human CSRNP2 (cysteine and serine rich nuclear protein 2).

NR:

description
PREDICTED: cysteine/serine-rich nuclear protein 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63793 True 378 lncRNA 0.60 1 9389784 9390161

Neighbor

gene id symbol gene type direction distance location
AMCG00008709 dazap2,LOC106572518,LOC106567170 coding downstream 63065 9321577 ~ 9326719 (-)
AMCG00008703 NA coding downstream 102097 9283550 ~ 9287687 (-)
AMCG00008704 NA coding downstream 134130 9232126 ~ 9255654 (-)
AMCG00008702 NA coding downstream 160325 9223114 ~ 9229459 (-)
AMCG00008705 cs,LOC107707042,LOC107715034,LOC107671863 coding downstream 184392 9197433 ~ 9205392 (-)
AMCG00008713 NA coding upstream 23537 9413698 ~ 9417891 (-)
AMCG00008717 NA coding upstream 141672 9531833 ~ 9554934 (-)
AMCG00008719 NA coding upstream 172739 9562900 ~ 9565171 (-)
AMCG00008718 bloc1s1,LOC107573571 coding upstream 189228 9579389 ~ 9587169 (-)
AMCG00008723 NA coding upstream 350123 9740284 ~ 9757947 (-)
G51006 NA non-coding downstream 214 9389211 ~ 9389570 (-)
G51005 NA non-coding downstream 736 9388824 ~ 9389048 (-)
G51004 NA non-coding downstream 1176 9388258 ~ 9388608 (-)
G51002 NA non-coding downstream 8030 9380751 ~ 9381754 (-)
G50999 NA non-coding downstream 10332 9376572 ~ 9379452 (-)
G51015 NA non-coding upstream 19598 9409759 ~ 9410974 (-)
G51044 NA non-coding upstream 131193 9521354 ~ 9525687 (-)
G51057 NA non-coding upstream 187107 9577268 ~ 9578383 (-)
G51081 NA non-coding upstream 348485 9738646 ~ 9739256 (-)
G51103 LOC106928590,LOC103386378,LOC107385311,LOC106514726 non-coding upstream 519450 9909611 ~ 9910800 (-)
G50788 NA other downstream 729767 8656728 ~ 8660017 (-)
G50739 NA other downstream 1018454 8367916 ~ 8371330 (-)
G50712 tuba1c,LOC108255233,LOC108433351,LOC103467923,LOC106456382,LOC102313992,LOC107707018,LOC107557552,LOC105930792,LOC107697948,LOC102193505 other downstream 1095430 8270324 ~ 8294354 (-)
AMCG00008668 LOC106456382,LOC108433351,LOC107714908,LOC103467923,LOC108433416,LOC103367934,LOC102193505,LOC108255233 other downstream 1096298 8281215 ~ 8293486 (-)
G50710 NA other downstream 1120458 8269023 ~ 8269326 (-)
G51008 NA other upstream 682 9390843 ~ 9393227 (-)
AMCG00008741 hdac7,LOC107704627,LOC107752451 other upstream 948164 10338325 ~ 10370316 (-)
AMCG00008744 NA other upstream 1170705 10560866 ~ 10603373 (-)
AMCG00008748 LOC107666380,LOC108429286,LOC107705699,LOC107681386,LOC107559866 other upstream 1280788 10670949 ~ 10718201 (-)
G51241 NA other upstream 1285595 10675756 ~ 10712485 (-)

Expression


Co-expression Network