G51157


Basic Information

Item Value
gene id G51157
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 10220233 ~ 10222915 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU63971
CTTTGATCTGTGACCTGCTCTGTACAATATGCTGATTGGCACTGTGGCCCAACACCAGTGTGTTCTGGGAAGGGATGTACATTGAAgaaactttttaaatacatttatttaaaaaaaatagacatttgcACACTATATTTGAGGCTTTAAAAATGCCCAGTCTAATTAACACTTCTACACAGTCCGAACCTAGAAGCTTTTCATGTTTGATGCTTGGGTGGCAGTTCTCTTAATGCAGATTAGCAGTAACTGTAcagtaataaaaacagtataaaaaacaTATCCTGCCTAACCTTTGAGGAACATAgaaggcttttaaaaaatatagtgGCAGGATTTTTTCCTCAAGAAACTGGGCAGCCAATATCTGTATACAATTcattatttgcatatatttatatattgtgacacaaagaaaacaacatatgTACATCAGAAACAGTGGCAACTTCTACAGCACACAACAGGTGTACAGCTGAGAGTTTCTGACAAAGAAGGGAAATTGGACgcaaatcataaataaatcaaacactcTCTGCATTTTCCATAGCATTAcatcaggggttttcaaaccggtcctggagtacaccctgcattACATTAACGTTAAGTCCTGATGCTCGTTGAATACTGCGATTCCTCTTCATCAGCCAAGGAGCTCCTGGATTATTAATACACGAAACTCCCAGGAGGATCAGAAGTGACAATACCAGAAGTCAAAAATTCACAATGTATTTCGCTGGGTGTAAATCCACCCTTGGGCTTCATCAATACTGCCTTCCTTTTGATACATGACCACAGAAACATCTGGGCCAGCGGGGGCCAGCCCtgttcctggagggccacaatCCAGCAGCTTTTCCAGCTATCTCGGAATCCTTTATCAGGGGCTACCTCCAACACATTTTGACTGATTAAAGCCAACAGTTGGCTCAATTAAGCACTTAAAGATTTGGATCAATCAAAACCCAAAGAAGGCACGCTGTGGCTCTTTGAGACCAGGGTTGCCCAGCCCTGATTGAGGCCAGTTCCCCTCTCAGTGCAGTTTCTACTGCCGTCTTCCACACGTCTGCGCTCTCCCATCATACAAACATCCAGCTTCTCTCGGCGCTCTACACGACCCACAAACACAGGCTGCTGTTGTGCGTGGGTTTGTGCTGCGTATATGTCTTCATGTCAAGGCTGCCGATTCAATTATAGCTGGGATCTGTATAATTTAGTATAATTCTGTATAATAAGACTTCAATTTTAGGCACTTAAATGGGATTTAAATTCCCCTGGGTGTGACGTACAATAGAACAAAGTTTCAGCAACCACATTAAAGTTATATAGGTTGCATAATACATAAAAGAAATCCTTGGCCATACAGTGTGCTAGACAtaacattacaatttcaaagcTCTCTATGTTctacatttctttatattttaagctGGTGTCATATGGGAATAAGAGGGACGTACAGATTCAAGCTTTTTCTGTGGAAACTGTGGagcataaaatgtgttttgtattggcATATCCCATCACACTGTAGAACGCCGGCTGCACATTTTCACAACTGTGCCTTTCTGTCGTCCTCCAGGGACCTGCTGGCGTCTCCTGTTAGGAGAGATCAGTCTTGACAAACCGGAGAGTTGGGTTTCGAATACCTGTAGGAAATACTGCAAGAGACACAGAGCAAGTGAGCACAGGGCTGCTACAAATCATCGATACGTCAGTGCTGATGTTTGTTCATTCAATGGACTTTGTTGACAAGACCCGTTGAGCTGCCTGTGCTGGACTCAAAGTGGTCCAGTGTAAAAgtgctataaatatatatacatgtataaaggCTTGTTCTGAACCAGCGCTGAAGACTGTGGATCCATCCTTCAGATGTTAAATCAGGCTCTTTGTAAGACTCTCTATTCCCACCTCTCTCTGGTCACTCAGGAAGATGAGAGCAGCTATTATTGAGTGTGTCTTATAAGACTGGCCTTTGAATCTGAAGCGGCACTCAGTTTGCATAATCGTGGCCGACTCATGGCCAAATCAAAAATAGCTATCTGTGGGAACTGACATCAGTGCCAGTTTTTGGTGCTAGTGTTCATTCACAGTGGGGTCCACCTTGTTGTTAGAGTCCCACTTTGGCCGGTGAAATAAATTACCCAGAACACCAAACAGTCATCCATGGTGCAGGAAAAAGtgaggggaaaacaaacatacaaaaataagccCACTGGTCATTTTTAAGTGTTCAGTGTGAGGCTCGGACAGGCAGTCTTCAGGATGCAGGACTTGTTTCACACCCACTTCGCACATCAAGGCTAAACTGGTACAGCAAGGAGGTGAACCTGGGCTGAGGCCTGCGGCTGAAGGCTCCCACGAGGCCTGGTGGGGCGGCAggcagcaggcaggcaggccggATTTCCTAACGCTCCAGGGCACGGGACAGCTGGGTCAGTCTGCGCTGGTTGTCGATCACCCTGAGGGTCTGGACGTACAGGCGGACACTGGTGGGGCTGCGGAGACTGACCGACTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63971 True 2525 lncRNA 0.45 2 10220233 10222915

Neighbor

gene id symbol gene type direction distance location
AMCG00008736 NA coding upstream 867 10217338 ~ 10219366 (+)
AMCG00008726 LOC106514726,LOC107385311,LOC101481525,LOC103356561,LOC106928590 coding upstream 309460 9861819 ~ 9910773 (+)
AMCG00008721 LOC106566152 coding upstream 484495 9704582 ~ 9735738 (+)
AMCG00008722 NA coding upstream 525161 9692091 ~ 9695072 (+)
AMCG00008720 NA coding upstream 580987 9621109 ~ 9639246 (+)
AMCG00008738 NA coding downstream 35531 10258446 ~ 10275211 (+)
AMCG00008737 slc48a1,LOC106567162,LOC106572510,LOC105022284 coding downstream 54035 10276950 ~ 10285158 (+)
AMCG00008742 LOC107709223 coding downstream 88667 10311582 ~ 10312097 (+)
AMCG00008745 NA coding downstream 388468 10611383 ~ 10618165 (+)
AMCG00008746 tmem106c,LOC107704621 coding downstream 395811 10618726 ~ 10625169 (+)
G51134 NA non-coding upstream 149034 9979398 ~ 10071199 (+)
G51129 NA non-coding upstream 245026 9973296 ~ 9975207 (+)
G51094 NA non-coding upstream 426014 9792138 ~ 9794219 (+)
G51065 NA non-coding upstream 505066 9640756 ~ 9715167 (+)
G51000 NA non-coding upstream 821864 9392027 ~ 9398369 (+)
G51168 slc48a1,LOC106567162,LOC106572510,LOC105022284 non-coding downstream 52266 10275181 ~ 10281982 (+)
G51209 NA non-coding downstream 335724 10558639 ~ 10563099 (+)
G51210 NA non-coding downstream 341459 10564374 ~ 10564940 (+)
G51211 NA non-coding downstream 343822 10566737 ~ 10567811 (+)
G51212 NA non-coding downstream 346795 10569710 ~ 10569936 (+)
AMCG00008725 NA other upstream 282481 9915494 ~ 9937752 (+)
AMCG00008727 NA other upstream 288718 9927387 ~ 9931515 (+)
AMCG00008707 tfcp2,LOC107715039,LOC107671887,LOC106572516 other upstream 840654 9355092 ~ 9379579 (+)
AMCG00008710 NA other upstream 904082 9310086 ~ 9316151 (+)
AMCG00008696 nabp1,LOC106565411,LOC106575791,LOC107675336 other upstream 1097421 9116675 ~ 9122812 (+)
AMCG00008749 krt8,LOC108429286,LOC107705699,LOC107666380,LOC107681386,LOC107559866,LOC108411779,LOC106935308,LOC103152763,LOC102227940,LOC106915440 other downstream 469462 10692377 ~ 10771675 (+)
AMCG00008752 LOC107666323 other downstream 605653 10828568 ~ 10846436 (+)
G51297 NA other downstream 761975 10984890 ~ 11040674 (+)
G51445 NA other downstream 1237448 11460363 ~ 11465488 (+)
AMCG00008784 NA other downstream 1471739 11694654 ~ 11704413 (+)

Expression


Co-expression Network