G51168 (slc48a1,LOC106567162,LOC106572510,LOC105022284)


Basic Information

Item Value
gene id G51168
gene name slc48a1,LOC106567162,LOC106572510,LOC105022284
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 10275181 ~ 10281982 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU63989
CCCGCAGCTCGGTTGTAAACAGATGATATAATGTAACTGTGGCAGCAGTTTCACTACAGATAGTGGCAGACCAACTAGTAATTGTGCCCGGCTTAGGAGCACAGACGCATGAGCTTGTAATACACTACAGCTTGCACCGTATCGGAGGGGCCGGCGCTGCCTTTCATTTAAATGAACAGCAGCCCATTCCATTAGAACTTCTCTTCGGATCTTGATTTATTGATCGATTTGTTATTCCTCATGGGGATCAATAAGATTTATATCAGTATAGGCTATGCCACCTTCGGGGTGCTGATGGGCTTCTCGGCTTTCTTCGTCTGGAACGTCGCTTTCAGGCAGCCGTGGACCGGCGCGATGGGAGGCTTGTCAGGTACCGTGAACAGCAGCCTCTAATGTGGACAGATGTCAGGTGTGGGACTCGTTAGAAAAGCCGAGCTGATAATGAGCTCAGCCGCCTCTGCTGAAGGGGACAGACAGCGCGGTCTTGTTATGGCacttgtgtgctgtgtgtcgCCCGGGGTATTGTGGGCTGCTGTGTGAGATGAGACTTATTCTGGACGGATTAGCCATACTGGATCTGTGCTTAATAGCACGGTTCTGATCCGAATTAAGGCCCCTGTCCAGAGTCTACAGCCCGGTCTTTGAACCGGAGCAtttgaactgaaactgaaaaagcttTGGTTGGAAGTGCCGGTACCACACGTTACCTTAAATAGGTGGACAGGTGCTGACCTGTTAGAgtgaatgcatgtttttaattatagtgtatttattattttatatcatgTATTAAAGCAATGTATTATAAGCAACTACAACTTAGCAGTGGGACGTTTTGCACTTGACAGTTTTGGGGCAGTatgcaaattattatatatCTGATCGTGAATATAAATATTGGGAGCGGGTTGATTATATATCgttaattacttttctttgtagttttagttttatagcGCCACACACTATGTACGCAGTATCATTGCAAATTCAGTTTTGTGGAGATGCATATGATGAAACGTTCACCGTTGAGTGActataaagtaattaaaaaaccaaatattttctgtgcacattatgtatattataaGAAGGGCATGCATTCAGGTAATCAGTCAGTAAAACCACCCTCATGTAAGTTGGTAAAATAGAGAGAACTTTTAAATTCCCAGGCAGCTTCCCCTGGGGGTAAAATATGCAGTCCTGTCAGTTCCTATTTGGAAAgatacttgtttgttttgggagCTCCGGTTACCTACATTATAAACACCCTTGCAAAGTGTGGCTCACTGGTGCCACACTTTCCTTAACCGATTTATGTATCTGTTAATGCTGCAGCCGTGCATTTTTGGACCAACCTGAGGACCGACCAGACTGTAGTTGACCTTGACCTTTGTGCAATAGTGGACTTTGAGATGGCCTGCATGTTAGCCTCTGATAGGCCTTTTGCCAATGATTAACGGCCCTGCGCTGGTGCCTCTGCCCGTGAAGCTGTCAGGGCTGAGTGTTCATCGATAGCATGGTTTCATAtcagatgaggaggaggaagctAGTCTCTGACCTAGAAAATGCACAGAGTGGAAGGAAGCTTCTTTAAAACAGCCATTAGAAAGACCCCTATTTCTCTTGGCCTAAAGGAACAtctatgttttttaaatgcacacagtTCCAAATGTGCACGTTCCTCTTCTTCCTGGTCTAGCTGTGCAAATATCTTtttagggggtgggggggggggtgagatCCAGCTAAATCAAAACAGGCTTCCAAACATGTATAGGCTTTAAAGAAGTACTGAAGGGTGTGGCGGGTTAAAGAATGATGTCCCGCAGGAAAAAACGTTTGGGAGCAAACCGGGCCAACAGTATAGGATGGGTCGACTCCTGTCACTTCCCAAATAACTGCTGAGGTCAGTGGGAGCCACGgatttaatgcattgttttggaAAAGGCATTCTCAGATCGGCTACTCTTAAAACAGCACGTTGTTCCGTTTTCAAACCAAAGGCAGGAACAGCATGACTCTATCTAGattacagttgttgtttttttcaggacAATTAGAGCATGCAAAGCAAAGGGGTAAAACTAAATTGACCTGgcaatttatttagtttttaaatgggGGGTTTATctagcaaaaaagaaaaatcaacaaaatatgaCCTAAAAATATGAGATATTTGATCTCTACAACTTTGCCAGTTTTGAGGGCTGTGTGGGAGCAAACTGATTTTGTTCCCCAATCAGTGAATTAACAATGTAGGACAGTGTTTCAGTGCTGGTGTGTCAGGACTGGTTAGTGGAATCAACAGGATTTGAAGGTTGGAGGAGTGGAGATACTCTGCACCAGCTGATGCACATTTTGCAGGGTGGGCTGTGTGGCTCTGTATAGCCCTGCAACAGGAAAAGTGGAATTGTTTAataaacctgaaagctttgggCAGTTGCTAAGCTATAAAGTGTAGCTGAGGTAGCGATccttaaacagatgttttttcgGTCATATCGGGGGGGGGATTTGAGTGTTGTGCACATAGACGGGGTGGTCCAGTGCTTAAGCTGGTGACCAGGTGCTCAGATTCTTGATGGCGTACAATTAGAACAatcctttattttctctctcgcATTGTTCATTTGTGTGGCAGACACATGTATCCCAGGcattatttgctgttttttaatgcatcagGACGATGTTCAGGAggttatattgatatatttgttttgaattgacCTGgctttatattaaacattcttGTTTCACAACCTGGCTGTTGATTTGTTTGCCCTTTAGTCAGTGCAGTCGTTGAGAGGCAGCCTGACTGTGCCAGCCTCTCCATCTGGGCACCGTGCCAGCCCTGGACTATCACACGGGACCCTGGCACCCCCATGCCAGCGACTGTCCTTCTGAAAAGCTGTGCACAGTTCCAGCTCTGCAGAGTTGCTGTGCTCCTGATTTTAAAGTTATaacatttcccttttttgttccttttcgcTTGTTAATTATCGTTCGGTTGCAGTTGCCGGGGGTTTCTCTGTCGCTGTTGTTTGACTGAGACGGGGAAACAATTCAGTGATGCACACTTTGTTGCATCCCACTAATATGCTGTGCAAGACTGACATCACTTCCTCTGCAAGTATTATGAGGACCCCTTTAGAAACTCCtgatattttttcagattttcaaatTGTCAGTTAATAGATATGGCAGTGAATTAGCCTTTCTTTATTCTGAGAGACCTAACACTATACACCATTGTATTGCATCAGTAGGCTACCTGCCACATTGTACGccgctgaaatgtttttgtttccattgtgGACCCAAAATTGTGGAACAGACACGCTTGCGAAAAGTAATATATTCATCATTCTTAACCCCTAAAGTCTGTGTTACACTGAGAATGCAGGCGGTAAATGTGGCTGGCTGTTTCAACCGGCAAAGAAGACGTCACCTCATcggtctctctccctccttcatttttttaatgcaatgaaTCCATTTCGTCAGTTTCAAAAGGAGATGCCTGTCAGCAATTGTCAGTCTGCGGACAAGGAGTGTTTTGAGAACCTGTAATTAGGAGCGGTGTCTGGTGGGGCAGGTCCCTGTCCCATGCTGCTTCTGCATTATGTGTGTCAAGGAAAACAAAGGGGGTTCTTGTCTTAGGATATAGCATGGGAGATATGGAGGCATGCGAGAGAGAACCAGAGCTGTCGTGTCTCTTTAACAAGTTAAAAACATGGGCCCCTTGCATGAGAAGCTCAAATCATAGCTGGCCAGGCTGAAAATCGATATTACCAACAGCAGTATAAAAAAGGACCCACACTGTGACTGTTGGGTTGTAGTAGAGCTCATGTGCTATGTAGAGCTTTTGTTTGCGAAGGGCCCCGTAACTGCCAGGATGGGTTGCAATATCCTGGACCACAGTGTACAGAATGGGCATGGGTTACACTTTATGGGGAGGGTCTGGACGTCTACCAACATGATAATGCTGTCAGTTGGGAGTGTAAGGCAGTGTTTCAAGGAGTAAGGCATTGAAAACAACTTGATGGCCCTGACCTCAACTGTGTAGATTAGAACACGACCGTGATCAACTGGAACAGTGAACCtggaccaaaaacaaaaaccctgtaAATACCAACGTCTCTCGCTAAGCTGGTAACTGCAGTTTTGTGACAGAAAGGCAGAGTATTGTTCTAAACCTCTGCCTAGACcctattaaattaatttgaaatcacTGTCGGTTGCATCCTGTTTGTTAcgtaatacattttgtaatgaagTGTACTCTGCTCCACTCAAAAGACATACAAAGTCCTCAATTCAACCCGAGCCCTACTGGCATCACTCAGCAAATTTGGGTTTGAGAACCATGActaagtttaattttgtttttgtggataTAACTTCTTGTGACCGGACATAAAAAAGGCCCTTCTGCAGCTCGCGTTTCCTGTTTAGGTCACAGGCCGATCGGCAGCTGGGGATCGAAACAGGAACGGGGTCCAGTTTACGTTCCCTTTGAAAGATTGTGCCGAGTCATGCTAGGCCCAGCAGAGCCCACATGACAAGGGCTGCCCTGCTGAGTCATGTTGTGAGGACTCCTATAGTCAGCAATCCAGAAGAGAGCGGGTCACGGTTACAGTAGCCTCTCATCAATgtcagacattaaaaaaatatataattatgattgtaaaaaaaatgatatccCAAATACACTTTTGTCTTTAGCATccatattgttgtttgttttctgtggagTCAAACGCATGCAAGAGGCTCTTCCTCCCTGCGTCTCGTGAGGCACTGGAGGGATTTGAGAACACGGTGTGCTGTGGAGGCTGATGAATGACACACTAACTCTTTCAAAGGACTCTTTCCCAGCATTTCAGTGGCTCGTGCCTTGCAAGGAAAGCAGGTATTGTGTTTGAAGCCAAGAAATACTTCCCCAGAGCCGGAAGAACTGGAAAAGCCCTTCAAACTTAATTGATCTGTTGAGGCGAGAATTTCTCTCTGGCATTACATATGTCTTGCAGTACCCAGTGACTGTAACTGACTCTTAGGAGGATTAGATGCTGGCAGTCAACTTATGTTATAACTTAACCTGTGATTTTTACTGAATACAAACCcatcctttcatttttttaaacccccTCTCCGGTCTGGGCGCTTCCTGTGTGTTAGTTATTCCAGTGGAGGGCAGCACACGTTAGCTTGATGTAGCAGTTTAATATGCAGAGTCAGGCCAGAGAGGGAACCACATTTTAGGATCTGGGGAAGTTATAAAAGTCATAAATCACATGCATCTTATATGTATTTCGCTGACGGCATGATTTCCATCGTGTTTGATAAGAGTGGAAcagatgttttagttttgttttctgggtGTGCTGGCTCTCTGGGCCCTGATCACTCACATCATGTATGTGCAAGATTACTGGCGCACCTGGCTGAAGGGACTCAAGTTCTTCCTCTGCATTGGGGGGCTGTTCTTCGTGTTGGCGGTGGTGGCCTTCGTCACCTTCCTCTCCCTCGCCATCACCCAGCACCAGTCGTTGACCGATCCCAAGAGCTACTACCTGTCCTGCGTGTGGAGCTTCCTCACTCTGAAGTGGGCCTTCCTGCTGGGCCTGTACTCGCACCGGTATCGCAAGGAGTTTGCCGACATCAGCATCCTGAGTGATTTCTGAAGGAAAAGTGAGACCTggggtgaaagagagagagagtgtgagaaaGGAGACAGGAGATAGGGTTGATGCTGTGAGG

Function

symbol description
slc48a1 Enables heme binding activity and heme transmembrane transporter activity. Involved in heme transport. Located in endosome membrane; lysosomal membrane; and plasma membrane.

NR:

description
PREDICTED: V-type proton ATPase subunit S1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63989 True 5769 lncRNA 0.45 3 10275181 10281982

Neighbor

gene id symbol gene type direction distance location
AMCG00008736 NA coding upstream 55815 10217338 ~ 10219366 (+)
AMCG00008726 LOC106514726,LOC107385311,LOC101481525,LOC103356561,LOC106928590 coding upstream 364408 9861819 ~ 9910773 (+)
AMCG00008721 LOC106566152 coding upstream 539443 9704582 ~ 9735738 (+)
AMCG00008722 NA coding upstream 580109 9692091 ~ 9695072 (+)
AMCG00008720 NA coding upstream 635935 9621109 ~ 9639246 (+)
AMCG00008742 LOC107709223 coding downstream 29600 10311582 ~ 10312097 (+)
AMCG00008745 NA coding downstream 329401 10611383 ~ 10618165 (+)
AMCG00008746 tmem106c,LOC107704621 coding downstream 336744 10618726 ~ 10625169 (+)
AMCG00008753 NA coding downstream 515789 10797771 ~ 10803672 (+)
AMCG00008754 NA coding downstream 613060 10895042 ~ 10906610 (+)
G51157 NA non-coding upstream 52266 10220233 ~ 10222915 (+)
G51134 NA non-coding upstream 203982 9979398 ~ 10071199 (+)
G51129 NA non-coding upstream 299974 9973296 ~ 9975207 (+)
G51094 NA non-coding upstream 480962 9792138 ~ 9794219 (+)
G51065 NA non-coding upstream 560014 9640756 ~ 9715167 (+)
G51209 NA non-coding downstream 276657 10558639 ~ 10563099 (+)
G51210 NA non-coding downstream 282392 10564374 ~ 10564940 (+)
G51211 NA non-coding downstream 284755 10566737 ~ 10567811 (+)
G51212 NA non-coding downstream 287728 10569710 ~ 10569936 (+)
G51220 NA non-coding downstream 327764 10609746 ~ 10673784 (+)
AMCG00008725 NA other upstream 337429 9915494 ~ 9937752 (+)
AMCG00008727 NA other upstream 343666 9927387 ~ 9931515 (+)
AMCG00008707 tfcp2,LOC107715039,LOC107671887,LOC106572516 other upstream 895602 9355092 ~ 9379579 (+)
AMCG00008710 NA other upstream 959030 9310086 ~ 9316151 (+)
AMCG00008696 nabp1,LOC106565411,LOC106575791,LOC107675336 other upstream 1152369 9116675 ~ 9122812 (+)
AMCG00008749 krt8,LOC108429286,LOC107705699,LOC107666380,LOC107681386,LOC107559866,LOC108411779,LOC106935308,LOC103152763,LOC102227940,LOC106915440 other downstream 410395 10692377 ~ 10771675 (+)
AMCG00008752 LOC107666323 other downstream 546586 10828568 ~ 10846436 (+)
G51297 NA other downstream 702908 10984890 ~ 11040674 (+)
G51445 NA other downstream 1178381 11460363 ~ 11465488 (+)
AMCG00008784 NA other downstream 1412672 11694654 ~ 11704413 (+)

Expression


Co-expression Network