G51226


Basic Information

Item Value
gene id G51226
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 10675565 ~ 10712485 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU64078
aaagaaaaaaacaagatcaGAATTAATAAAACTTTCCATAAGAGGAGTTTTGTCTGCGCCATCCAGTcagttctgtctgtctttctgtctgttcGCCACAGTGAGCAAGCAATCCCTTGTGGTACGTCAAGCTAGGAAAGGTGgaagacttaaaaaatataccaaaggtatagaaaaacaaaacaagtcttGGGTGCTCAGAATGTGGCCTTTTAGCTGTTGGTCACCAGTGCAGTCATAGAGAAGCTTAGGGATGACTGCATTCCCCAGACTGTCCTCCAGCTTCCCCGAACAGCACTCTGGCTTTAATGGGCGATACCACAGACCTGTGTGGTACAATGCTGTTTACATAGTTGGGCACCCATTTGAAACTGAGAGGCAAGGAGAATGTGACAAGTTAGAAACATCCCATCCTTCCCTTTACTTCTACATCCGCTGAGCCCGCTGTGTTTGTATTAGTGCCATGTGACGTTCGACTGAATGCAGACCTTATTGACTTCAAAGTGCGCCCAACTCCTCAGAGGTGGTTTGTGCTGAAATGGCAGCGCTGAGCCCCTTGGCTTTGACTGATCTCGTCCTTACATTCTGTTCACTGAGGTTGTTGTGAGTGCACTGTTGAAGACTAAAGAATTAAAGAATACTGACTGTTGTCACCAAATTAAATTTTCTACATTGGCCCTGTAacatcaaaactgaaataaatatgagtGCTTCAA
>TU64079
caaaTGTCTTAGTCACaattttttctttatacatttcGGTGATATGaattcacaaacaaaaaataattaagcagaaaaaatattgatattctACTAAAGAAATGTAGCATTGTAACACAATTAGCATCAACAATACGCAATAGCATGTCACCACCTGCGTTATGTCAATAGGCTACAAACAATCGCTCACATTTGCTAGTTGAGTGGAGACTCACTTTCTCATCTGTCTTCACTTTCTGTTTGGTAGCCTAACAACAAACTTAATCCTTAGTACCATACCAATACACAAAAGAAACGAAAAACCAACAAACCCCAAACTCTTGGTATGGAAGACAGGACAAGTGAAAGTCAAGACACGTTGTGTTGAAGCACTcagatttatttcagttttgctgTTACAGGGTCAATTGTAGAAAATTCAGGATTCTTTATGTGCATTCTTTAGTCTTCAACAGTGCACTCACAACAACCTCAGTGAACAGAATGTAAAGACTAGATCAGTCAAAGCCAAGGGGCTCAGCGCTGCCACTTCATTACAAACCACCTCTGAGGAGGCCAATCATAGAAAATTAAATCTGGTTACAACAGTCAGTATTCTGTATTTGCATTGTAATTCTTTAGTCTTCAACAGTGCACTCACAACCACACCAGTGAACAGAATGTAAGGACTAGATCAGTCAAAGCCAAGGGGCTCAGCGCTGCCATTTCAGCACAAACCACTTCTGAGGAGATGGGCGCACTTTGAAGTCAATAAGGTCTGCATTCAGTCAAACGTCGCATGGCACTAATACAAACACAGCGGGCTCAGTGGATGGAGAAGTAAAGGGAAGGATGGGATNNNNN
>TU64080
aaagaaaaaaacaagatcaGAATTAATAAAACTTTCCATAAGAGGAGTTTTGTCTGCGCCATCCAGTcagttctgtctgtctttctgtctgttcGCCACAGTGAGCAAGCAATCCCTTGTGGTACGTCAAGCTAGGAAAGGTGgaagacttaaaaaatataccaaaggtatagaaaaacaaaacaagtcttGGGTGCTCAGAATGTGGCCTTTTAGCTGTTGGTCACCAGTGCAGTCATAGAGAAGCTTAGGGATGACTGCATTCCCCAGACTGTCCTCCAGCTTCCCCGAACAGCACTCTGGCTTTAATGGGCGATACCACAGACCTGTGTGGTACAATGCTGTTTACATAGTTGGGCACCCATTTGAAACTGAGAGGCAAGGAGAATGTGACAAGTTAGAAACATCCCATCCTTCCCTTTACTTCTACATCCGCTGAGCCCGCTGTGTTTGTATTAGTGCCATGTGACGTTCGACTGAATGCAGACCTTATTGACTTCAAAGTGCGCCCAACTCCTCAGAGGTGGTTTGTGCTGAAATGGCAGCGCTGAGCCCCTTGGCTTTGACTGATCTCGTCCTTACATTCTGTTCACTGAGGACTAGATCAGTCAAAGCCAAGGGGCTCAGCGCTGCCATTTCAGCACAAACCACTTCTGAGGAGATGGGCGCACTTTGAAGTCAATAAGGTCTGCATTCAGTCAAACGTCGCATGGCACTAATACAAACACAGCGGGCTCAGTGGATGGAGAAGTAAAGGGAAGGATGGGATNNNNN
>TU64082
caaaTGTCTTAGTCACaattttttctttatacatttcGGTGATATGaattcacaaacaaaaaataattaagcagaaaaaatattgatattctACTAAAGAAATGTAGCATTGTAACACAATTAGCATCAACAATACGCAATAGCATGTCACCACCTGCGTTATGTCAATAGGCTACAAACAATCGCTCACATTTGCTAGTTGAGTGGAGACTCACTTTCTCATCTGTCTTCACTTTCTGTTTGGTAGCCTAACAACAAACTTAATCCTTAGTACCATACCAATACACAAAAGAAACGAAAAACCAACAAACCCCAAACTCTTGGTATGGAAGACAGGACAAGTGAAAGTCAAGACACGTTGTGTTGAAGCACTcagatttatttcagttttgctgTTACAGGGTCAATTGTAGAAAATTCAGGATTCTTTATGTGCATTCTTTAGTCTTCAACAGTGCACTCACAACAACCTCAGTGAACAGAATGTAAAGACTAGATCAGTCAAAGCCAAGGGGCTCAGCGCTGCCACTTCATTACAAACCACCTCTGAGGAGTTGGGCGCACTTTGAAGTCAATTGGGTCTGCATTCAGTCGATCGTCACATGGCACTAATACAAACACAGCGGGCTCAGTGGATGGAGAAGTAAAGGGAAGGATGGGATNNNNN
>TU64084
aaagaaaaaaacaagatcaGAATTAATAAAACTTTCCATAAGAGGAGTTTTGTCTGCGCCATCCAGTcagttctgtctgtctttctgtctgttcGCCACAGTGAGCAAGCAATCCCTTGTGGTACGTCAAGCTAGGAAAGGTGgaagacttaaaaaatataccaaaggtatagaaaaacaaaacaagtcttGGGTGCTCAGAATGTGGCCTTTTAGCTGTTGGTCACCAGTGCAGTCATAGAGAAGCTTAGGGATGACTGCATTCCCCAGACTGTCCTCCAGCTTCCCCGAACAGCACTCTGGCTTTAATGGGCGATACCACAGACCTGTGTGGTACAATGCTGTTTACATAGTTGGGCACCCATTTGAAACTGAGAGGCAAGGAGAATGTGACAAGTTAGAAACATCCCATCCTTCCCTTTACTTCTACATCCGCTGAGCCCGCTGTGTTTGTATTAGTGCCATGTGACGTTCGACTGAATGCAGACCTTATTGACTTCAAAGTGCGCCCAACTCCTCAGAGGTGGTTTGTGCTGAAATGGCAGCGCTGAGCCCCTTGGCTTTGACTGATCTCGTCCTTACATTCTGTTCACTGAGGTTGTTGTGAGTGCACTGTTGAAGACTAAAGAATTAAAGAATACTGACTGTTGTCACCAAATTAAATTTTCTACATTGGCCCTGTAacatcaaaactgaaataaatatgagtGCTTCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64078 False 716 lncRNA 0.44 2 10681116 10682879
TU64079 True 843 lncRNA 0.39 2 10675565 10712485
TU64080 False 774 lncRNA 0.47 3 10681116 10712485
TU64082 False 667 lncRNA 0.39 2 10675565 10712485
TU64084 False 716 lncRNA 0.44 2 10681116 10682879

Neighbor

gene id symbol gene type direction distance location
AMCG00008746 tmem106c,LOC107704621 coding upstream 50396 10618726 ~ 10625169 (+)
AMCG00008745 NA coding upstream 57400 10611383 ~ 10618165 (+)
AMCG00008742 LOC107709223 coding upstream 363468 10311582 ~ 10312097 (+)
AMCG00008737 slc48a1,LOC106567162,LOC106572510,LOC105022284 coding upstream 390407 10276950 ~ 10285158 (+)
AMCG00008738 NA coding upstream 400354 10258446 ~ 10275211 (+)
AMCG00008753 NA coding downstream 85286 10797771 ~ 10803672 (+)
AMCG00008754 NA coding downstream 182557 10895042 ~ 10906610 (+)
AMCG00008755 NA coding downstream 198642 10911127 ~ 10929774 (+)
AMCG00008758 NA coding downstream 225754 10938239 ~ 10949947 (+)
AMCG00008757 NA coding downstream 237529 10950014 ~ 10950787 (+)
G51220 NA non-coding upstream 1781 10609746 ~ 10673784 (+)
G51212 NA non-coding upstream 105629 10569710 ~ 10569936 (+)
G51211 NA non-coding upstream 107754 10566737 ~ 10567811 (+)
G51210 NA non-coding upstream 110625 10564374 ~ 10564940 (+)
G51209 NA non-coding upstream 112466 10558639 ~ 10563099 (+)
G51252 NA non-coding downstream 91421 10803906 ~ 10804107 (+)
G51265 NA non-coding downstream 155450 10867935 ~ 10910645 (+)
G51283 NA non-coding downstream 238592 10951077 ~ 10953420 (+)
G51298 NA non-coding downstream 307731 11020216 ~ 11057436 (+)
G51446 NA non-coding downstream 753327 11465812 ~ 11466083 (+)
AMCG00008725 NA other upstream 737813 9915494 ~ 9937752 (+)
AMCG00008727 NA other upstream 744050 9927387 ~ 9931515 (+)
AMCG00008707 tfcp2,LOC107715039,LOC107671887,LOC106572516 other upstream 1295986 9355092 ~ 9379579 (+)
AMCG00008710 NA other upstream 1359414 9310086 ~ 9316151 (+)
AMCG00008696 nabp1,LOC106565411,LOC106575791,LOC107675336 other upstream 1552753 9116675 ~ 9122812 (+)
AMCG00008752 LOC107666323 other downstream 116083 10828568 ~ 10846436 (+)
G51297 NA other downstream 272405 10984890 ~ 11040674 (+)
G51445 NA other downstream 747878 11460363 ~ 11465488 (+)
AMCG00008784 NA other downstream 982169 11694654 ~ 11704413 (+)
AMCG00008810 NA other downstream 1827113 12539598 ~ 12549618 (+)

Expression


Co-expression Network