G51241


Basic Information

Item Value
gene id G51241
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 10675756 ~ 10712485 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU64104
NNNNNATCCCATCCTTCCCTTTACTTCTCCATCCACTGAGCCCGCTGTGTTTGTATTAGTGCCATGCGACGTTTGACTGAATGCAGACCTTATTGACTTCAAAGTGCGCCCATCTCCTCAGAAGTGGTTTGTAATGAAGTGGCAGCGCTGAGCCCCTTGGCTTTGACTGATCTAGTCTTTACATTCTGTTCACTGAGGTTGTTGTGAGTGCACTGTTGAAGACTAAAGAATGCACATAAAGAATCCTGAATTTTCTACAATTGACCCTGTAAcagcaaaactgaaataaatctgAGTGCTTCAACACAACGTGTCTTGACTTTCACTTGTCCTGTCTTCCATACCAAGAGTTTGGGGTTTGTTGGTTTTTCGTTTCTTTTGTGTATTGGTATGGTACTAAGGATTAAGTTTGTTGTTAGGCTACCAAACAGAAAGTGAAGACAGATGAGAAAGTGAGTCTCCACTCAACTAGCAAA
>TU64105
NNNNNATCCCATCCTTCCCTTTACTTCTCCATCCACTGAGCCCGCTGTGTTTGTATTAGTGCCATGCGACGTTTGACTGAATGCAGACCTTATTGACTTCAAAGTGCGCCCATCTCCTCAGAAGTGGGGCTCAGCGCTGCCATTTCAGCACAAACCACCTCTGAGGAGTTGGGCGCACTTTGAAGTCAATAAGGTCTGCATTCAGTCGAACGTCACATGGCACTAATACAAACACAGCGGGCTCAGCGGATGTAGAAGTAAAGGGAAGGATGGGATGTTTCTAACTTGTCACATTCTCCTTGCCTCTCAGTTTCAAATGGGTGCCCAACTATGTAAACAGCATTGTACCACACAGGTCTGTGGTATCGCCCATTAAAGCCAGAGTGCTGTTCGGGGAAGCTGGAGGACAGTCTGGGGAATGCAGTCATCCCTAAGCTTCTCTATGACTGCACTGGTGACCAACAGCTAAAAGGCCACATTCTGAGCACCCaagacttgttttgtttttctatacctttggtatattttttaagtcttcCACCTTTCCTAGCTTGACGTACCACAAGGGATTGCTTGCTCACTGTGGCgaacagacagaaagacagacagaactgACTGGATGGCGCAGACAAAACTCCTCTTATGGAAAGTTTTATTAATTCtgatcttgtttttttcttttcttttcctgttttctaattttaaagGGTAAGGTAGGTTTCAGCAAGAgtacagagagagggatagaacaGCTGAGTCTAGGggtttgtattgctttgtttcaATTAAGAGAACAAGAAAGGCAGTGACAACAGCACCCAAACAGCCTCAGATCAGGGTTGGGGACAGCAAAGGGCTTttataagtgtttttcttttgagacAGATGCACAAAAAGTCAAGCCCACCTGATTTCCAATCAAGACTGGAATACTTTGAAATTTGAAGTTGTGTGTGGATGGATGAAGTGGGTTATTTGTCCAAAACTATAGATTGCAAGCACAGGCAGGGGAATGTGGGGGAACAGGATAAGGGGATGAGCTGGTTTGAAAGCCAGGGCTCAATGCTGCTATCCTGTGATTTGAGGAGGGAAGGGTGCTGTGTTGCTAGCTCTGGGTGGGGCTAGATATGATATGTAGAGACATGGTAGGACTTCTCTTGGCTTTAATAACGCCTCGAGGTGGAGACCGAGGAAAAGGAAGATTTTGAGATGGATCCACCAGATGACATTCCGCCACTTCCAAAactgctgccgccgccgccgccgccaccGCCAATTCCAAGACTGCTGCCGCCAATTCCAAAACTGCTCCCACTGCCACCGCCACCACTGCTGCCACCGCCGCCAATTCCAAAGCCTCTGCTGCTGCCTCCTCCCATTCTAAAGCCTCCGCCGCCGCCTCCCATTCCAAAGCCTCCACCGCCACCGCCACCGCCGCCGCCTCCCATTCCAAAGCCTCcgccgccaccaccaccacccattCCAAatcctcctccaccaccaccaccggcGGAGAagt
>TU64106
NNNNNATCCCATCCTTCCCTTTACTTCTCCATCCACTGAGCCCGCTGTGTTTGTATTAGTGCCATGCGACGTTTGACTGAATGCAGACCTTATTGACTTCAAAGTGCGCCCATCTCCTCAGAAGTGGTTTGTGCTGAAATGGCAGCGCTGAGCCCCTTGGCTTTGACTGATCTAGTCCTTACATTCTGTTCACTGGTGTGGTTGTGAGTGCACTGTTGAAGACTAAAGAATTACAATGCAAATACAGAATACTGACTGTTGTTGTTGTGAGTGCACTGTTGAAGACTAAAGAATGCACATAAAGAATCCTGAATTTTCTACAATTGACCCTGTAAcagcaaaactgaaataaatctgAGTGCTTCAACACAACGTGTCTTGACTTTCACTTGTCCTGTCTTCCATACCAAGAGTTTGGGGTTTGTTGGTTTTTCGTTTCTTTTGTGTATTGGTATGGTACTAAGGATTAAGTTTGTTGTTAGGCTACCAAACAGAAAGTGAAGACAGATGAGAAAGTGAGTCTCCACTCAACTAGCAAA
>TU64107
NNNNNATCCCATCCTTCCCTTTACTTCTCCATCCACTGAGCCCGCTGTGTTTGTATTAGTGCCATGTGACGATCGACTGAATGCAGACCCAATTGACTTCAAAGTGCGCCCAACTCCTCAGAGGTGGTTTGTAATGAAGTGGCAGCGCTGAGCCCCTTGGCTTTGACTGATCTAGTCTTTACATTCTGTTCACTGAGGTTGTTGTGAGTGCACTGTTGAAGACTAAAGAATGCACATAAAGAATCCTGAATTTTCTACAATTGACCCTGTAAcagcaaaactgaaataaatctgAGTGCTTCAACACAACGTGTCTTGACTTTCACTTGTCCTGTCTTCCATACCAAGAGTTTGGGGTTTGTTGGTTTTTCGTTTCTTTTGTGTATTGGTATGGTACTAAGGATTAAGTTTGTTGTTAGGCTACCAAACAGAAAGTGAAGACAGATGAGAAAGTGAGTCTCCACTCAACTAGCAAA
>TU64108
CactcatatttatttcagttttgatgtTACAGGGCCAATGTAGAAAATTTAATTTGGTGACAACAGTCAGTATTCTTTAATTCTTTAGTCTTCAACAGTGCACTCACAACAACCTCAGTGAACAGAATGTAAGGACGAGATCAGTCAAAGCCAAGGGGCTCAGCGCTGCCATTTCAGCACAAACCACCTCTGAGGAGTTGGGCGCACTTTGAAGTCAATAAGGTCTGCATTCAGTCGAACGTCACATGGCACTAATACAAACACAGCGGGCTCAGCGGATGTAGAAGTAAAGGGAAGGATGGGATGTTTCTAACTTGTCACATTCTCCTTGCCTCTCAGTTTCAAATGGGTGCCCAACTATGTAAACAGCATTGTACCACACAGGTCTGTGGTATCGCCCATTAAAGCCAGAGTGCTGTTCGGGGAAGCTGGAGGACAGTCTGGGGAATGCAGTCATCCCTAAGCTTCTCTATGACTGCACTGGTGACCAACAGCTAAAAGGCCACATTCTGAGCACCCaagacttgttttgtttttctatacctttggtatattttttaagtcttcCACCTTTCCTAGCTTGACGTACCACAAGGGATTGCTTGCTCACTGTGGCgaacagacagaaagacagacagaactgACTGGATGGCGCAGACAAAACTCCTCTTATGGAAAGTTTTATTAATTCtgatcttgtttttttcttttcttttcctgttttctaattttaaagGGTAAGGTAGGTTTCAGCAAGAgtacagagagagggatagaacaGCTGAGTCTAGGggtttgtattgctttgtttcaATTAAGAGAACAAGAAAGGCAGTGACAACAGCACCCAAACAGCCTCAGATCAGGGTTGGGGACAGCAAAGGGCTTttataagtgtttttcttttgagacAGATGCACAAAAAGTCAAGCCCACCTGATTTCCAATCAAGACTGGAATACTTTGAAATTTGAAGTTGTGTGTGGATGGATGAAGTGGGTTATTTGTCCAAAACTATAGATTGCAAGCACAGGCAGGGGAATGTGGGGGAACAGGATAAGGGGATGAGCTGGTTTGAAAGCCAGGGCTCAATGCTGCTATCCTGTGATTTGAGGAGGGAAGGGTGCTGTGTTGCTAGCTCTGGGTGGGGCTAGATATGATATGTAGAGACATGGTAGGACTTCTCTTGGCTTTAATAACGCCTCGAGGTGGAGACCGAGGAAAAGGAAGATTTTGAGATGGATCCACCAGATGACATTCCGCCACTTCCAAAactgctgccgccgccgccgccgccaccGCCAATTCCAAGACTGCTGCCGCCAATTCCAAAACTGCTCCCACTGCCACCGCCACCACTGCTGCCACCGCCGCCAATTCCAAAGCCTCTGCTGCTGCCTCCTCCCATTCTAAAGCCTCCGCCGCCGCCTCCCATTCCAAAGCCTCCACCGCCACCGCCACCGCCGCCGCCTCCCATTCCAAAGCCTCcgccgccaccaccaccacccattCCAAatcctcctccaccaccaccaccggcGGAGAagt
>TU64111
NNNNNATCCCATCCTTCCCTTTACTTCTCCATCCACTGAGCCCGCTGTGTTTGTATTAGTGCCATGCGACGTTTGACTGAATGCAGACCTTATTGACTTCAAAGTGCGCCCATCTCCTCAGAAGTGGTTTGTGCTGAAATGGCAGCGCTGAGCCCCTTGGCTTTGACTGATCTAGTCCTTACATTCTGTTCACTGAATGTAAGGACGAGATCAGTCAAAGCCAAGGGGCTCAGCGCTGCCATTTCAGCACAAACCACCTCTGAGGAGTTGGGCGCACTTTGAAGTCAATAAGGTCTGCATTCAGTCGAACGTCACATGGCACTAATACAAACACAGCGGGCTCAGCGGATGTAGAAGTAAAGGGAAGGATGGGATGTTTCTAACTGGTGCACCAAATGCTAAGAGGCAAGGAGAATGTGACACGTTAGAAACATCCCTTCCTTCCCTTTACTTCTGCATCCGCTGAGCCCGCTGTGTTTGTGACGATCGACTGAATGCAGACCCAATTGACTTCAAAGTGCGCCCAACTCCTCAGAGGTGGTTTGTAATGAAGTGGCAGCGCTGAGCCCCTTGGCTTTGACTGATCTAGTCTTTACATTCTGTTCACTGAGGTTGTTGTGAGTGCACTGTTGAAGACTAAAGAATGCACATAAAGAATCCTGAATTTTCTACAATTGACCCTGTAAcagcaaaactgaaataaatctgAGTGCTTCAACACAACGTGTCTTGACTTTCACTTGTCCTGTCTTCCATACCAAGAGTTTGGGGTTTGTTGGTTTTTCGTTTCTTTTGTGTATTGGTATGGTACTAAGGATTAAGTTTGTTGTTAGGCTACCAAACAGAAAGTGAAGACAGATGAGAAAGTGAGTCTCCACTCAACTAGCAAA

Function

GO:

id name namespace
GO:0060841 venous blood vessel development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64104 False 476 lncRNA 0.42 2 10675756 10712485
TU64105 False 1519 TUCP 0.49 3 10680278 10712485
TU64106 False 539 lncRNA 0.41 2 10675756 10712485
TU64107 False 476 lncRNA 0.42 2 10675756 10712485
TU64108 True 1548 TUCP 0.48 2 10680278 10682873
TU64111 False 890 lncRNA 0.45 4 10675756 10712485

Neighbor

gene id symbol gene type direction distance location
AMCG00008747 NA coding downstream 13565 10655011 ~ 10662191 (-)
AMCG00008743 LOC103045919,LOC106565233,LOC102299085,LOC100696631,LOC102216220 coding downstream 185990 10472530 ~ 10489766 (-)
AMCG00008739 NA coding downstream 417905 10221420 ~ 10257851 (-)
AMCG00008740 NA coding downstream 482491 10183119 ~ 10193265 (-)
AMCG00008734 NA coding downstream 610422 10059303 ~ 10065334 (-)
AMCG00008750 e3,LOC108429286,LOC106565226,LOC107705699 coding upstream 7007 10719492 ~ 10725176 (-)
AMCG00008751 krt8,LOC105023875,LOC107551542,LOC108411779,LOC107681390 coding upstream 51531 10764016 ~ 10771654 (-)
AMCG00008756 NA coding upstream 246099 10958584 ~ 10972379 (-)
AMCG00008765 NA coding upstream 291671 11004156 ~ 11011571 (-)
AMCG00008763 pcbp2,LOC100691124,LOC103464415,LOC106956729 coding upstream 309063 11021548 ~ 11035727 (-)
G51243 NA non-coding downstream 1901 10668711 ~ 10673855 (-)
G51120 NA non-coding downstream 744654 9927245 ~ 9931102 (-)
G51103 LOC106928590,LOC103386378,LOC107385311,LOC106514726 non-coding downstream 764956 9909611 ~ 9910800 (-)
G51081 NA non-coding downstream 936500 9738646 ~ 9739256 (-)
G51057 NA non-coding downstream 1097373 9577268 ~ 9578383 (-)
G51251 krt18,LOC107727028,LOC107551541,LOC100692632,LOC102212553 non-coding upstream 88623 10801108 ~ 10803709 (-)
G51261 eif4b non-coding upstream 126621 10839106 ~ 10839672 (-)
G51344 NA non-coding upstream 345192 11057677 ~ 11140273 (-)
G51354 LOC100846954 non-coding upstream 450861 11163346 ~ 11164374 (-)
G51403 NA non-coding upstream 514002 11226487 ~ 11258218 (-)
AMCG00008744 NA other downstream 72383 10560866 ~ 10603373 (-)
AMCG00008741 hdac7,LOC107704627,LOC107752451 other downstream 305440 10338325 ~ 10370316 (-)
G51008 NA other downstream 1282529 9390843 ~ 9393227 (-)
G50788 NA other downstream 2015739 8656728 ~ 8660017 (-)
G50739 NA other downstream 2304426 8367916 ~ 8371330 (-)
G51250 NA other upstream 85147 10797632 ~ 10799154 (-)
AMCG00008777 dctn2,LOC102785932 other upstream 523157 11235642 ~ 11326359 (-)
AMCG00008815 NA other upstream 1888806 12601291 ~ 12605260 (-)
G51797 NA other upstream 2178326 12890811 ~ 12891597 (-)
G51799 NA other upstream 2182850 12895335 ~ 12897134 (-)

Expression


Co-expression Network