G51283


Basic Information

Item Value
gene id G51283
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 10951077 ~ 10953420 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU64180
ACCATGGGGCTCAAACCACCCCTGTCGTTTTCCAACATCCCCCCCGGTGACTCAAAAGGGCGGCTGCAGGTTCTTGATGGGACTGGGGACTTTCTCTGAACTGACTTTGGGCATGTTATGATGCCGTGTGCTGTCTGGTTGGCAGACACAGTCCTGCACCACTTAGTTGTTgaacaaatgtaacaaaagggggaaaaaaaaaagaaaaaaaataataataagcacaacagagtgttttctttcaaaagccCGCAGACCTTTGTTTTCCTCCGCTGTTGTCGAGGGCAGACCCAGCAGCCGGTTGCTGGGTGAGTGTCGTGTGGCAGCCGCAGTGTGTGCGCAGGCGTGTGCTCCTCAGGGTCGCAATGCGGTTCTAGCACAGGTCCACGGTTGGCAGTGTGAGTTTGCATTGGTGTTGCACAAATAAGTCTGAGGCCTTATATAGTCCAGAAATACTTGATGGTACCTTGGCACCACTTGCTTTGCAGTGACTCGAACGAAGGCAGTCATATGAAGTCCAAGGCAGTAacctgcaatacattttaaaggtggACACCCCATGCATAGAGATCTCCCCTTCAGACAGTCCCCACTGGGAGCCGTGTGTCACTGCAGGTAGCACTGCCCTCCCCTTATCTGTGCAGTACCCAGCAGGCTGCCCAGCTGCTCAGACTTGTACTCATCAGTTGTCAAGAGAGGATCAAGTCGGTTGGCAGAGCCGTGTGAGGCGCGCTGGGGTATATAAGCCCGCCCCCGGTGCTGGGTGATCTGCTTTTTAGAGCTTCGTTAGGATGCTTAGTAGAAACGGCTGCAGCCTTCCAAATCCTTCATAGGGGTTGCTACTGAAGCGGTGGGGTTGGGGGTGATACACTACCTAGCCTGAGGAAATTAGGTCAATTAATGGCTCCCGTGAACTAAAACGATTTTTGTCCACTTCCTGCACCACTTGCAACCTGGCATCCCGATCCGTTACCTTTTCCAGCCTGTTGTGTCGGGTCAGAGCATGGCAGCAGCTACACAATCTGATTGGTCCACAGCTCGTTGAATGCTAGTTCAACCTGTCTCAGGTTATGGCTATCGGCGTATATATTTGGAAGCTTCCCTCCCAAACGTCTCGAGGTGTCGTGCGTGAGGCCCGAGCGTTGCGTGTGACAATTTGAACCGACAGCTGCTTTCAAAGAGGCGAGGAAGCCGTCAGCACTGTCTACAGGAGAGAAGAGCTGTTCATTTACACAGCGTAAATGGTCTGCAGCTAATCTCCTGCATGGTACAGTGTTTTGCAGTAGGACAAAATTTgcctccattttctttttttatgtgacTATGTGAAGTTGCAAATCCAGCATAGGTgagaaaaagggaaattaatgtgtttttgtttagcgCTCCTGCTAATTTAACTgtagaaagaaaattaattggTACAGTTGGAACTGATGACATAATTTTGTGACTGTAGTTCATTTTACTTTACAGTGACAATACTCTGTTTGTGTGCGAGAGGTGAACGTGACCCGGTTTAGATAGTCCCGTATAATGGACCAGTGAGCCATATAGGTATCCATACAGGCTTTACCCTGCATAAAATGCCAACAGGGGCGAAGGTGCTTTAGACGAGCCCAGTACCTATTAGCAACAGCCTTCACACCCACCCTGATTTTATACCTGCCAGGCACTTTTATCTCTCAGCTACTCTAATAGCATCTGTGACCCCGTTGCCCCGACCAGTCTCAAGTCCTAGTCCAGTGGTATAGTATGGTTTGATAGACCTGGCTGATGTATAATTTTGTTAGTAACGAGCACAGTCCCCCGATGTACTGTTGGAGTCGTTTATGTAACCACAACTGTCTTGTTTTCCACCATCTTCCTTCCACTCTTTATAGTTGTGTGTGCTTTCCAAACTGCAGCTTTCATTATCCTTCTGCCGTTCCACCCCTTCACTGTACTAGTATAATGGGAACAGGGGCTACGAACTCTATGGGCAGTGTATAGTCCTTTAACGTCAATGTTGAGCTTGACATGGACTTGTTTAACTGGTCGTCATTATAAGGGAGAgtttggaataataataaaaaataaaaataaatcccaacCTGCTGTAGACGGATTGTGCTGTGGTTTGAAGGAACCGTGTAGAAGACTGTTTATCTGTCCAAATGTTTTCTAGAACATGCTGCTGAAAATGATGGGATCACTGTGTATATTTCTCCTTCTAAGCCctttacagttttttgttttgtttgttttgaaaatcagTGTATGAAATCGCTTTCCAAAGATCTGATTACAACTTCTTAGGAAcgaagtgtatatatttttttctctctctctcacactgaaGACA

Function

GO:

id name namespace
GO:0015672 monovalent inorganic cation transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64180 True 2344 lncRNA 0.46 1 10951077 10953420

Neighbor

gene id symbol gene type direction distance location
AMCG00008757 NA coding upstream 290 10950014 ~ 10950787 (+)
AMCG00008758 NA coding upstream 1130 10938239 ~ 10949947 (+)
AMCG00008755 NA coding upstream 21303 10911127 ~ 10929774 (+)
AMCG00008754 NA coding upstream 44467 10895042 ~ 10906610 (+)
AMCG00008753 NA coding upstream 147405 10797771 ~ 10803672 (+)
AMCG00008759 NA coding downstream 44150 10997570 ~ 11017498 (+)
AMCG00008760 NA coding downstream 99322 11052742 ~ 11061279 (+)
AMCG00008768 NA coding downstream 161604 11115024 ~ 11122159 (+)
AMCG00008769 NA coding downstream 190602 11144022 ~ 11152563 (+)
AMCG00008770 NA coding downstream 229797 11183217 ~ 11189156 (+)
G51265 NA non-coding upstream 40432 10867935 ~ 10910645 (+)
G51252 NA non-coding upstream 146970 10803906 ~ 10804107 (+)
G51226 NA non-coding upstream 238592 10675565 ~ 10712485 (+)
G51220 NA non-coding upstream 277293 10609746 ~ 10673784 (+)
G51212 NA non-coding upstream 381141 10569710 ~ 10569936 (+)
G51298 NA non-coding downstream 66796 11020216 ~ 11057436 (+)
G51446 NA non-coding downstream 512392 11465812 ~ 11466083 (+)
G51483 NA non-coding downstream 759292 11712712 ~ 11716482 (+)
G51582 NA non-coding downstream 1108654 12062074 ~ 12062289 (+)
G51584 NA non-coding downstream 1122068 12075488 ~ 12077513 (+)
AMCG00008752 LOC107666323 other upstream 104641 10828568 ~ 10846436 (+)
AMCG00008749 krt8,LOC108429286,LOC107705699,LOC107666380,LOC107681386,LOC107559866,LOC108411779,LOC106935308,LOC103152763,LOC102227940,LOC106915440 other upstream 179402 10692377 ~ 10771675 (+)
AMCG00008725 NA other upstream 1013325 9915494 ~ 9937752 (+)
AMCG00008727 NA other upstream 1019562 9927387 ~ 9931515 (+)
AMCG00008707 tfcp2,LOC107715039,LOC107671887,LOC106572516 other upstream 1571498 9355092 ~ 9379579 (+)
G51297 NA other downstream 31470 10984890 ~ 11040674 (+)
G51445 NA other downstream 506943 11460363 ~ 11465488 (+)
AMCG00008784 NA other downstream 741234 11694654 ~ 11704413 (+)
AMCG00008810 NA other downstream 1586178 12539598 ~ 12549618 (+)
G51734 NA other downstream 1762074 12715494 ~ 12716786 (+)

Expression


Co-expression Network