G51297


Basic Information

Item Value
gene id G51297
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 10984890 ~ 11040674 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU64199
ttttatttgtgcaaaTTTGTGCTAGACTGGCAGAAAAAGGGACGCCACAAAAAAGCCTTTgaagttattaatttattgatgtcCGGGGAACTGATTCAAATTGGAATGCTGTGTTTGGTTAAAACTGGATGTGAATGTATCTTATAatatgaggaagaaaaaaaaaaaaaaaaaaagctttcttcCATTATCTACAGATAATTTCACACTCGCCCTCTTTATAagattatacatatacattcatatatagaTTAGATAAAAGAAAGCAGTTATATAGTCAGTAGCACAGTGGGACTTACAGTGGCATCCAGGGGTGTCCTCAGAGAAGCCCGAAATATTACGCAACGGAAAATCTGCCTTCTCACTTGCTAAACGTGAGGCGTCAGGGGAATGTGTTGTAGTGGGCAGCCCCCGGAGGACAGTGTGTGAACCCGTTCTGCAAAAGCCCATATGCAATATCTTTTGAACAGGGAGCTGCAGTCCTGATCGGCGATTGTCTGGACTGGTCTGCGACTCCGCGTCAGCGTCAAGAGTGATGGTCAGTCCGagtcgctgctgctgctgctgctgctggaggaaTGCTCCCATGCTTATGGTACTTGTGGtccttcttcatcttcttcttcatcttcttgtGTGCCTTGTGCCCTCCCATCACCATGCCAACCCCCGCCAGCCCCCCAGCTAATCCCCCTGCCATGCCGGGTGCCATGGGATAGTGTTTTCCGTGCTTGTGGCCTTTGCCGTGATGGTCTACTGGGTACCCAGTGGGATAGGGGCCTGGGAGGACCCCACCAGGTGGGGCTGGGTAAGCGGGGTTGACCCCAGGATACCCAGGGGGACAGGCGGGGACTCCTGGATAGGTCCCAGGGCCAGGGTGGTAAGGCTGCTGGCCTGGCATGCCACCTGGAGGCACGGGGTAGGGGCCTGGGAATTGGGGGTTGACAGCAGGAGGGAAGGCTGGGTTTGCTCCTGGTGGGTAGGCTGGGTCGTGGCCTGGAGGATAGTTAGGGTTGGGGGGCGGCGGACCCATGGGATATCCCCCTGGCTGCTGCC
>TU64201
taaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagctttcttcCATTATCTACAGATAATTTCACACTCGCCCTCTTTATAagattatacatatacattcatatatagaTTAGATAAAAGAAAGCAGTTATATAGTCAGTAGCACAGTGGGACTTACAGTGGCATCCAGGGGTGTCCTCAGAGAAGCCCGAAATATTACGCAACGGAAAATCTGCCTTCTCACTTGCTAAACGTGAGGCGTCAGGGGAATGTGTTGTAGTGGGCAGCCCCCGGAGGACAGTGTGTGAACCCGTTCTGCAAAAGCCCATATGCAATATCTTTTGAACAGGGAGCTGCAGTCCTGATCGGCGATTGTCTGGACTGGTCTGCGACTCCGCGTCAGCGTCAAGAGTGATGGTCAGTCCGagtcgctgctgctgctgctgctgctggaggaaTGCTCCCATGCTTATGGTACTTGTGGtccttcttcatcttcttcttcatcttcttgtGTGCCTTGTGCCCTCCCATCACCATGCCAACCCCCGCCAGCCCCCCAGCTAATCCCCCTGCCATGCCGGGTGCCATGGGATAGTGTTTTCCGTGCTTGTGGCCTTTGCCGTGATGGTCTACTGGGTACCCAGTGGGATAGGGGCCTGGGAGGACCCCACCAGGTGGGGCTGGGTAAGCGGGGTTGACCCCAGGATACCCAGGGGGACAGGCGGGGACTCCTGGATAGGTCCCAGGGCCAGGGTGGTAAGGCTGCTGGCCTGGCATGCCACCTGGAGGCACGGGGTAGGGGCCTGGGAATTGGGGGTTGACAGCAGGAGGGAAGGCTGGGTTTGCTCCTGGTGGGTAGGCTGGGTCGTGGCCTGGAGGATAGTTAGGGTTGGGGGGCGGCGGACCCATGGGATATCCCCCTGGCTGCTGCC

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64199 True 1056 lncRNA 0.52 2 11038341 11040674
TU64201 False 915 TUCP 0.54 3 10984890 11040674

Neighbor

gene id symbol gene type direction distance location
AMCG00008757 NA coding upstream 34103 10950014 ~ 10950787 (+)
AMCG00008758 NA coding upstream 34943 10938239 ~ 10949947 (+)
AMCG00008755 NA coding upstream 55116 10911127 ~ 10929774 (+)
AMCG00008754 NA coding upstream 78280 10895042 ~ 10906610 (+)
AMCG00008753 NA coding upstream 181218 10797771 ~ 10803672 (+)
AMCG00008760 NA coding downstream 12068 11052742 ~ 11061279 (+)
AMCG00008768 NA coding downstream 74350 11115024 ~ 11122159 (+)
AMCG00008769 NA coding downstream 103348 11144022 ~ 11152563 (+)
AMCG00008770 NA coding downstream 142543 11183217 ~ 11189156 (+)
AMCG00008771 NA coding downstream 148748 11189422 ~ 11197752 (+)
G51283 NA non-coding upstream 31470 10951077 ~ 10953420 (+)
G51265 NA non-coding upstream 74245 10867935 ~ 10910645 (+)
G51252 NA non-coding upstream 180783 10803906 ~ 10804107 (+)
G51226 NA non-coding upstream 272405 10675565 ~ 10712485 (+)
G51220 NA non-coding upstream 311106 10609746 ~ 10673784 (+)
G51446 NA non-coding downstream 425138 11465812 ~ 11466083 (+)
G51483 NA non-coding downstream 672038 11712712 ~ 11716482 (+)
G51582 NA non-coding downstream 1021400 12062074 ~ 12062289 (+)
G51584 NA non-coding downstream 1034814 12075488 ~ 12077513 (+)
G51586 NA non-coding downstream 1038023 12078697 ~ 12080204 (+)
AMCG00008752 LOC107666323 other upstream 138454 10828568 ~ 10846436 (+)
AMCG00008749 krt8,LOC108429286,LOC107705699,LOC107666380,LOC107681386,LOC107559866,LOC108411779,LOC106935308,LOC103152763,LOC102227940,LOC106915440 other upstream 213215 10692377 ~ 10771675 (+)
AMCG00008725 NA other upstream 1047138 9915494 ~ 9937752 (+)
AMCG00008727 NA other upstream 1053375 9927387 ~ 9931515 (+)
AMCG00008707 tfcp2,LOC107715039,LOC107671887,LOC106572516 other upstream 1605311 9355092 ~ 9379579 (+)
G51445 NA other downstream 419689 11460363 ~ 11465488 (+)
AMCG00008784 NA other downstream 653980 11694654 ~ 11704413 (+)
AMCG00008810 NA other downstream 1498924 12539598 ~ 12549618 (+)
G51734 NA other downstream 1674820 12715494 ~ 12716786 (+)
G51756 NA other downstream 1802041 12842715 ~ 12846233 (+)

Expression


Co-expression Network