G51298


Basic Information

Item Value
gene id G51298
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 11020216 ~ 11057436 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU64202
GAGGCATTGTACTGGTTTGTTTCAACATTTTTCAGCTTTTAATTCTGTGTAATTCAGAGTTTTAACAGtagcggggggtggggggtgcccCCGGGTCAACAAGGTTTTGAAACGAGCAAAGGGGGTTaaattttagaaaataaaaaggtgatTTTAGGTAAAGAACTTCAAGATACCAGTGATAATCCTTGGACTAACTCATGTTGCCACAATACAGTGTGGGCTGGACAccatacaaaaaagaaaagaaaaaaagcctgTCATATGATCAGCctaaatcaataacaaaatgcaggggggggggggggggggaaaaaaaaaaaaaaaaaaaaa
>TU64205
GAGGCATTGTACTGGTTTGTTTCAACATTTTTCAGCTTTTAATTCTGTGTAATTCAGAGTTTTAACAGtagcggggggtggggggtgcccCCGGGTCAACAAGGTTTTGAAACGAGCAAAGGGGGTTaaattttagaaaataaaaaggtgatTTTAGGTAAAGAACTTCAAGATACCAGTGATAATCCTTGGACTAACTCATGTTGCCACAATACAGTGTGGGCTGGACAccatacaaaaaagaaaagaaaaaaagcctgTCATATGATCAGCctaaatcaataacaaaatgcagggggggggggggggNNNNNNNNNNNNNNNNNNNatacaaaaataaaataaaaaataccctAAAAGGTTTTCCACATAGACTGGACTAGAGTTTGATGGTATCTTCCATCAGAGGGACTACCCTTTCATGACTGCTGGACCTCTTCGTTCTTCCCCAAAGACTGCACACAGTGGTAATGGGAAGTAGGAATGCTGCAACTAAAGACAGTAATCGCAAAAGGTACTGATCAGCCTATGTATCCATTAAATGTCATCTCTGCTGCAAACGGTCTATGGTTGCTAGAATCTGGCCTGCACCGACATGCTCCCAATGCCAACATGCATCAGGCCTCACGGTTGCCCTTTCACAACCACACCGGCACCGCACGGGTTTCCTAAGAGACACACGAGGACGGCCAACTTCAAGGACAAGCCTgggtttatttccttttaaagagtaaaaaatagaattttaaaacaaaaataaacccaaaaaAATGCGGAGATAATAAATCAGTCCATctattcttttttaatttttttgtattttttttttatttcttttttttttgtcgtttttTTTCTTAGAAAAATCTGACATTACAGAACTAAACTTAAGCCTATTCAGATTTTTCACTTCTACACTTTCTGATggtataacaaacaaaaaatgaaaggggaaagggaaggaaaaaaaaaaaaaaaaatatttaaatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64202 False 333 lncRNA 0.40 2 11020216 11024020
TU64205 True 990 lncRNA 0.37 2 11020216 11057436

Neighbor

gene id symbol gene type direction distance location
AMCG00008759 NA coding upstream 2718 10997570 ~ 11017498 (+)
AMCG00008757 NA coding upstream 69429 10950014 ~ 10950787 (+)
AMCG00008758 NA coding upstream 70269 10938239 ~ 10949947 (+)
AMCG00008755 NA coding upstream 90442 10911127 ~ 10929774 (+)
AMCG00008754 NA coding upstream 113606 10895042 ~ 10906610 (+)
AMCG00008768 NA coding downstream 57588 11115024 ~ 11122159 (+)
AMCG00008769 NA coding downstream 86586 11144022 ~ 11152563 (+)
AMCG00008770 NA coding downstream 125781 11183217 ~ 11189156 (+)
AMCG00008771 NA coding downstream 131986 11189422 ~ 11197752 (+)
AMCG00008774 LOC106566145,LOC107558166 coding downstream 222476 11279912 ~ 11291300 (+)
G51283 NA non-coding upstream 66796 10951077 ~ 10953420 (+)
G51265 NA non-coding upstream 109571 10867935 ~ 10910645 (+)
G51252 NA non-coding upstream 216109 10803906 ~ 10804107 (+)
G51226 NA non-coding upstream 307731 10675565 ~ 10712485 (+)
G51220 NA non-coding upstream 346432 10609746 ~ 10673784 (+)
G51446 NA non-coding downstream 408376 11465812 ~ 11466083 (+)
G51483 NA non-coding downstream 655276 11712712 ~ 11716482 (+)
G51582 NA non-coding downstream 1004638 12062074 ~ 12062289 (+)
G51584 NA non-coding downstream 1018052 12075488 ~ 12077513 (+)
G51586 NA non-coding downstream 1021261 12078697 ~ 12080204 (+)
AMCG00008752 LOC107666323 other upstream 173780 10828568 ~ 10846436 (+)
AMCG00008749 krt8,LOC108429286,LOC107705699,LOC107666380,LOC107681386,LOC107559866,LOC108411779,LOC106935308,LOC103152763,LOC102227940,LOC106915440 other upstream 248541 10692377 ~ 10771675 (+)
AMCG00008725 NA other upstream 1082464 9915494 ~ 9937752 (+)
AMCG00008727 NA other upstream 1088701 9927387 ~ 9931515 (+)
AMCG00008707 tfcp2,LOC107715039,LOC107671887,LOC106572516 other upstream 1640637 9355092 ~ 9379579 (+)
G51445 NA other downstream 402927 11460363 ~ 11465488 (+)
AMCG00008784 NA other downstream 637218 11694654 ~ 11704413 (+)
AMCG00008810 NA other downstream 1482162 12539598 ~ 12549618 (+)
G51734 NA other downstream 1658058 12715494 ~ 12716786 (+)
G51756 NA other downstream 1785279 12842715 ~ 12846233 (+)

Expression


Co-expression Network