G51445


Basic Information

Item Value
gene id G51445
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 11460363 ~ 11465488 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU64384
TCACAAGTTGaccatctatttatttataaaccagtaaaatataatacatatgtataaaaacatgacaaaaatgttcacaaaaatatatcaCTTGAGTTCCTGTATGGATGCAGTAAATGCtaacattattaaatgttctTTTGCCAGCAAAAAGTTCAGTTGAACTGTGAAAGGTAAGACActgtaaaaatgcatacatcacAACATTACAGGACATTTAAAAAGTGACCTTTCTCTATATGAAAGTCATTACATTCTATGTAacatctttatataaaaaaactgaGCAGTTATGGGTTGTagtctttttaaaaatctatatacttttatgtgcattttatttatttttcaatcaaaaTCATCTTTGGTTCCCAAAATACAGAATGTAGCGTTTGCTAAATAAGACATTGAGGATTCGGGCTGGAAGACATCTTCCAGTGGACtttaaatgaatataatatGCGTCCTGCTGGGATTGCAGTGTCACTCAGGTTCCTTCAACCCTACACCGGTAACACTAGTCCTAGCTAAGACTTCGTTAGTTGGTACCCTGGATCAATTCATCCTGAGGCAGTGAGGACATGACTGGCACCCTGTCTTATTCTTATGaacagaaaagtttttttttttaatgactttcaaCAATCCATGGCAGTTTGAGAGATGTGGCCCATGTGAAAAGGCTACATCTCGCAAAACACCACATGCTGAAGCACAGTGTTGTTTCTAAGGCAcggtatgtgtgtgtttgtatttcatttgtgttaCTTGAGTCTTTGTGATTGTAAAGTGGCACAGTGGTAGGTAAGGGGGAAGGCTGGTTGTGTTGTtacagtacataaaaaaaaaaaaaaaactgctctaGAAGATTACAATTAGAAATCAACTGTCAGCAAGAGATGGATGAATGGTCCGTGAAGCCTTCTGAAAGACAGGACGCAGTTCTGAGTACACTAGCTGTGCTTCTAGCATTAGCTTTTGTAAAGCAATTGCAggatgtgtgtatttaaactCGAGGTAATTAGGATACGTTTTTTTAATCAAGCCCTTATTGTGTCTGTTTATAgtacaagcaaaacaaacaaacaaatagcaCAGTGGTAAATGCTGTGAATACTgctaaagaaatatatttgttttcttccatgcTTCCACAACTGAATGCCTAAAGAAGAGAGTCTGTCTGATGCGTCACATGATGTCGAATGGGCCAATCAGCAGACTCACTGTGCAGTGGTTTAAGGCAAAGGGGTTGGGGCAGACAACTGCCACTGTGATTTGTTGCGGGGAAGAAATGAACACTCGGCAGAAATGGCCTTGGGTAAAGTTTCCTGCTGtcactttaaaacatgaaacatgcaAAGTACAAACATGACACAGTTATGAAATTTCAGGAGAATCCATCTGAAATGCTGAGgctgtctttctctcttcaGAAGGGGAATTCGAGGCCTGGTCTATATTTACAGCCAAACACGGTGCTTTGTACATAGTACTTCTTCAGACCTCAGTCTTGGGGGCAATCACCTTGAACAGTGTTTCTTTTAGGaaatttcactttgttttttaatcaatactGTTTTTGTCCAATGAATGTTACAAAGCAGCTGAAATGTAACCGAGTCACTGCACACGATGTGTGTCCACCATGTGACATGCTGTTATTGGGTTACAGTCTCTGTGTGCAccactcctctccctctcataGCTGGAGCACCTGACATTGTATTGTCCAGGATTGTCTGTCATGTAGGCACAGATGGAGGTAGACCACAAATTGCTGGATGCATCAATGGAAGTCAAAGGCACTTACTCTTGAAATATGCAGCTTTCTATGCATGCTTTCTTTGTGAGTCCGGCAGTTATGTTCCTGCACTGAAGAGCTGTCACGGAAAATATACTGGCGTAGAGGATTTGCTTCATCCCATCACACCTGTGGATTTAGCCGAGATGTTGGTGTGGATCccaaagctttattttctccaaCTCCGTTTGGACGTGTCCTAGTGCTATAAATGATGCTCTGGGATATTCCCATGGGACAATATTAGAAGCtgatttttgtctgtttgccaTTGCTGTGACTCTTCTCAATGACAGCCCATTCAAATATTTACCCAACAGTTTCAAAAGTGAATTCTTATTAGGAGTCCTTaccttctgaaatgtttttcttttataatgatgataaaaaaacagattgtgTAGAACGGAAGTTGTGCTCGTCAATGTCTGCACTGGTAGCTTCTACATATACACAGCATATCTatttacacaaaatgtaaactttGTAGCCCCTCCTGCATTCCTGTCTCTTTTATCTGCCATGATTTGGCAGGATTTGGTTGCATCACCTTGAGACCAAACCAGGCGTCAAGGTCTACCAACCGTCAAGCAACAACTTAGTAGTCTTGACAAAAATCAGTTCCTCTTTGAAGCCGTGTGAGAGAGTGTCCAAATGGCACCTATTCTTTGGCTTCTGAGACAGTGTATTTAATGCAGGGAGGGGAATGTGTTTGTGCACGTACGTTTCTCAGATTCGAGGTCTGCCTTTTTTCTACGACAGGGTGTTGAGATATTTGTTCTCCCCAGCCAGAGAGGTCAGGATGGAAGTCATGTCGCCCACAGCCATGTTGGATAGGCTGGACTGCAGTGTGAGGGAGTTGCGTGGGGTGGTGAGGCGAGAGGATGTCTGGGAGGAGCCCTGGAGAGGGTGCGGACTGAAGGACCCCGGCATCATGGAAGAGGATGGGTCCGAGTCATCAATAATGGCAGCAAAGTCTATCTGCGCATTCTCCAGGTCCAGGTTGTCTAGAGCATTGGACATCTGGACAGGTTCAGGGTATGCTAAAGACGCAGACTTATTTTGATCCATTTGGCCCAAGTGCGGCTGGCTCATGCAGATCCCTTGCTGGGAGTCCTGCCTGCTCAGCTGTTTCCCCATATCTGGATGCATCTGGATCTGCGCAGAGTAATACATAGTGTTGGAGatggtgttgttgttgctgcccGGAGGGGGGCCCGGGGTTAGCTCAGGATGCGGTGGCACGGGAGGCAGTCGGATATTCCTCCTGGGGCTGGTGGAGGTCTCATGTCCAGGGCTGAGGTGAGGAGGGCTGCCCAGGTACCCGGGCTGATGGGTCTGGCTGTTCTGTCGACTTATAGGTTTGCGCCCCTGTGGGGGTCTGGGCACGAGGTCCTGGCTGTAGCACTGGCTGTTGGGGCTCAGTAGGTCTTTGGACTGAATGGAGCTTGCTCCCCCGTTGTGTGACGGACTCATGAGGTTCTGGTTCTGGTAGCCCATGtagttgctgctgctgtaagCATGCTGCTGCTGGGGGCTGTGCTGCATCATCTGGACTGAGCCTCCCATCTCCATGCCGTCCACCAGTGGGGGTTGCGGGGGAGGTAGAGGCATGCCCATCTCACTCCGCTCTTGCTGGTGTTGCTGCTGCTCCCACATAAGTGCCTGTTGCGACTGCACGTAATTCCTCACCATCATCTCCTTCACCTGCATCATGGGGGTCTGGGAGCGCCGCCCGTCCCGGAGGGGTGACCCACACACCATCCCAGAGGAGCCCATACCTGTGCTGGGGAAGGCCACTGGCTGCTGGTTATCCAGCTGCCCTTGGAACTCACAGCTTGCGGCTCCCggcctcatcatcatcatctgccCTGGCGGCCCATAGCCCTGTGGAGCAGGCATGGGCTGCTGCTTCATGTTCTGGCAGGCATTCGAGGACTGGAGGGACTGGTGGAACTGCTGCTCAGGCTTGATAGCCTGCTGAGGCGGGACTTTCTGCGTGTTGTTGTTAAACATGGCCTGCTGGCTGTGGCCAGCATTAGACACGGTTAGACCACTGTGGTTCTGCGGTGGGTGCTGGATTGCAGACCTGTGGTCCTGATATTGCCCAGCGCCCGCCACCATGGCCGGCTGCAGCCCGTGTGGGTTCTGGTGTTGGGTCACGACGCTTGGGTTTTGCTCACCCCACTGTCCTGATAGGCTCTCGTTAGCATTAATTGGTCCCATGTTTGTGTACTGAGGGCCAGAGGGGCTCAACTGGCAGGTGTTCAACCCATACTCCGCCTGCTGCATCATGGTGCTCATCCCCCCCTGATGGATGACGTCCACCTGTGCGCTTCCCATATCCCTGCGCTGGCTGTGAAACAGCCCTTGCATTCCCACGGCCGGGTAGCCACGCTCGTTGCAGTTTAGGTTCTCGTGACCAGGGGACAGCTGGCTAGATCCCTGGGGGTAACCCATGTATCCCATGCCTTCACCGGGATTCATCATAATGTTCGGATCCCTTGGCTGGTTGTTGGCAGACGAGGGCTCCATTGTTGCCATGGCCTCCAACATGACGTTCTCAGAGATGCTCGGGGGACGAGGCGAGTACACATGGCGGGAAATGTTGGCTTCAGACCCTCCGAAATGCTGCAGGGTGCCAGTGGTGGCGTTCCTCCGGCCCATCATGGGCATGTTGACGTTGTTCAGGCTGCTGAAGCGCTGGACTTTGGGCACAGCTTGCTGATCGGCCCCAGACCTCACTGGGTCACTGGCCCTCCGCGCCACGTTGCCTGGTGCCTGGTGCGGGTGGATGATGCCTGTCCCGTAACTGCTGTAGTCATTGGCGCTGTTCCTGCGGTTGACCCCTTGCTGTAAGAATGGGGGCAGCGGCTGGCCGTGGAACTCGCTCATGAACCCCATTCTAGGGTTGGGCCCGGGGGGCTCCATGTTGGGTAGAGGTGTTGGGGGAGGCCCACCTGTGGCTGCTGCATATTTGGCCTTTAAACTGTATTGCTGTGCAGGGGTCAGGTTTGGGAGGCCTGGCAGCCCCCCTGTCCCTCCCCTGCACACCCCTGATCTCCGGCTGGATTCAGGGGAGTTGGGGTCCCCAGTGTCCTTGCCCAGGATGTTCTGGGGATGTCCTCCGATCAGGGACACATCACTGGAGCGGCGGCTGGAGAGGTAGGGCGAGACGAGGGAGGAGCGGCGGCTGACAGTGTAGGCGGAGCTCACGCTGCTGGTCCCACTGTTGCGGCGCTCGTTGTGCGGCCCTGGGGCCCCCAGGTCTGTGTTGGACAGCTCCATCACGCGACGGTTCGACAGCATGGGCGACGGCCCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64384 True 5126 TUCP 0.50 1 11460363 11465488

Neighbor

gene id symbol gene type direction distance location
AMCG00008778 NA coding upstream 68334 11369713 ~ 11392029 (+)
AMCG00008775 NA coding upstream 124142 11331875 ~ 11336221 (+)
AMCG00008774 LOC106566145,LOC107558166 coding upstream 169063 11279912 ~ 11291300 (+)
AMCG00008771 NA coding upstream 262611 11189422 ~ 11197752 (+)
AMCG00008770 NA coding upstream 271207 11183217 ~ 11189156 (+)
AMCG00008783 r3hdm2 coding downstream 102370 11567858 ~ 11599637 (+)
AMCG00008782 LOC107563942 coding downstream 136927 11602415 ~ 11618855 (+)
AMCG00008787 NA coding downstream 367798 11833286 ~ 11834344 (+)
AMCG00008791 NA coding downstream 517290 11982778 ~ 12002806 (+)
AMCG00008798 tuba4l,LOC105008555,LOC107706828,LOC107669576 coding downstream 647896 12113384 ~ 12126602 (+)
G51298 NA non-coding upstream 402927 11020216 ~ 11057436 (+)
G51283 NA non-coding upstream 506943 10951077 ~ 10953420 (+)
G51265 NA non-coding upstream 549718 10867935 ~ 10910645 (+)
G51252 NA non-coding upstream 656256 10803906 ~ 10804107 (+)
G51226 NA non-coding upstream 747878 10675565 ~ 10712485 (+)
G51446 NA non-coding downstream 324 11465812 ~ 11466083 (+)
G51483 NA non-coding downstream 247224 11712712 ~ 11716482 (+)
G51582 NA non-coding downstream 596586 12062074 ~ 12062289 (+)
G51584 NA non-coding downstream 610000 12075488 ~ 12077513 (+)
G51586 NA non-coding downstream 613209 12078697 ~ 12080204 (+)
G51297 NA other upstream 419689 10984890 ~ 11040674 (+)
AMCG00008752 LOC107666323 other upstream 613927 10828568 ~ 10846436 (+)
AMCG00008749 krt8,LOC108429286,LOC107705699,LOC107666380,LOC107681386,LOC107559866,LOC108411779,LOC106935308,LOC103152763,LOC102227940,LOC106915440 other upstream 688688 10692377 ~ 10771675 (+)
AMCG00008725 NA other upstream 1522611 9915494 ~ 9937752 (+)
AMCG00008727 NA other upstream 1528848 9927387 ~ 9931515 (+)
AMCG00008784 NA other downstream 229166 11694654 ~ 11704413 (+)
AMCG00008810 NA other downstream 1074110 12539598 ~ 12549618 (+)
G51734 NA other downstream 1250006 12715494 ~ 12716786 (+)
G51756 NA other downstream 1377227 12842715 ~ 12846233 (+)
G51812 NA other downstream 1459750 12925238 ~ 12926794 (+)

Expression


Co-expression Network