G51614


Basic Information

Item Value
gene id G51614
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12190733 ~ 12249909 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU64579
aaaataataataataataataataataataataataataataataataataataataactgcaaaGAATTCCTTAATGTATGAACTCACCTAGATTCTACAAGTACAGTAAATATTCAAAGAGTACAAATTGTGCAAAGTACAGTCATACAATGAGGCAGGTAGCAAGTCAGCAAGCAACtccaaatggaaaaatatatagatggggattttttttaaaccggATAGTCAAAACTGCTTTCAcaactctctccctccttcaccCCTCCCTCTGTTCCACCCCTCCCATTTCCCcctcttcttttcatttttctttgcttttgtcaaaatatccctcctccaccccatgGCTAGCTCCCTTATTTGGTAAAAGTCTAAAAAACATCCAGTAACTATAGAATGTAAAACAAGCATCTCAGCTAACTGCAatagaataaaagaaaagaaaagaaaaaaaaacacagctagATTACTGATAAAAACAGACCACAAAATGTGCACTTATATGGAAATTtcttcaaaatgtcaaaactaGACACTAGAGCACAGCCCTTTGCTTCCATGTAtacaacagctttttaaaaacacattagcaTATGTCAGTGTAGGAGGATGTGTGTAGTATTTGAGCAACTGATATGGAGGCCTTAAATGAGCAAAGTAAGTTGTACGCAAGCCCCCAAACCCTTTGAGTTTCTATTGATTTACACCTACGACAGTTTTTAAAATCTCCGTGCTCAAGGCTCCCTTCTCTGTCGGACACCCCTTTGAGCCGGAGCTTTTGCCCTTGCTTGTAACAGACCAGGCCCATGCTTCAGAACACATGTGTGCATTCCTGCGTGCTTCCCCTTCGGAGCCGTAACCGTATCGCTGCAAAGTATCATAGCACCATTGCTTACAGTCAGGGCTGGAATCTGATGTCTGTGGGCGCTATCGTATTTTGCCAAGTTGATGGGATATTATTTAATAGGTAGTTGAAAAACGATCTTCGGTTTCTAaggtgaggtgaggtgaggGACTGATGGTTGCCCCGCCCCCTACGTTGCCCCAcccacaatacaaaaaatattttatacaaaaaataagagaTCGTTAATGTCACaatttgtctgtctgttggtTTTTCGATCCATAACTAAGAGCGTATTTGCAGCAGTGTGTGCtgggtgtgtcagtgtatcGGTTCATTTGCTGTGTGTAGCGAACATTTGCGTGCGTGCGTCAGTTAGTCAGTGGTTGTGGGGGGTGGAGCAATGTGTGTAAGactgtgtctgagtgtgtgttcTGCAGTCCCggtgtttgtgtcagtgtgtgtgtgagtgtattagCTGGATGAATGGTTGTGCTTCTCTATCGCCCTCTCGTGGCCACCGAGGAGGGGGGCAGCAGTGGCGCTTCCTGAACTTCACTGCCAGAGGGGGGCGTCAGA

Function

GO:

id name namespace
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64579 True 1428 lncRNA 0.42 2 12190733 12249909

Neighbor

gene id symbol gene type direction distance location
AMCG00008795 NA coding upstream 47375 12132486 ~ 12143358 (+)
AMCG00008798 tuba4l,LOC105008555,LOC107706828,LOC107669576 coding upstream 64131 12113384 ~ 12126602 (+)
AMCG00008791 NA coding upstream 187927 11982778 ~ 12002806 (+)
AMCG00008787 NA coding upstream 356389 11833286 ~ 11834344 (+)
AMCG00008782 LOC107563942 coding upstream 571878 11602415 ~ 11618855 (+)
AMCG00008804 hoxc13,LOC107715003 coding downstream 87977 12337886 ~ 12338736 (+)
AMCG00008803 NA coding downstream 108818 12358727 ~ 12359365 (+)
AMCG00008808 hoxc11,hoxc11a,LOC108433364 coding downstream 135671 12385580 ~ 12386302 (+)
AMCG00008809 NA coding downstream 149503 12399412 ~ 12415105 (+)
AMCG00008807 NA coding downstream 172805 12422714 ~ 12423406 (+)
G51586 NA non-coding upstream 110529 12078697 ~ 12080204 (+)
G51584 NA non-coding upstream 113220 12075488 ~ 12077513 (+)
G51582 NA non-coding upstream 128444 12062074 ~ 12062289 (+)
G51483 NA non-coding upstream 474251 11712712 ~ 11716482 (+)
G51446 NA non-coding upstream 724650 11465812 ~ 11466083 (+)
G51665 NA non-coding downstream 176024 12425933 ~ 12426222 (+)
G51673 NA non-coding downstream 188942 12438851 ~ 12439523 (+)
G51685 NA non-coding downstream 254007 12503916 ~ 12504176 (+)
G51710 NA non-coding downstream 309562 12559471 ~ 12559699 (+)
G51718 NA non-coding downstream 396614 12646523 ~ 12647964 (+)
AMCG00008784 NA other upstream 486320 11694654 ~ 11704413 (+)
G51445 NA other upstream 725245 11460363 ~ 11465488 (+)
G51297 NA other upstream 1150059 10984890 ~ 11040674 (+)
AMCG00008752 LOC107666323 other upstream 1344297 10828568 ~ 10846436 (+)
AMCG00008749 krt8,LOC108429286,LOC107705699,LOC107666380,LOC107681386,LOC107559866,LOC108411779,LOC106935308,LOC103152763,LOC102227940,LOC106915440 other upstream 1419058 10692377 ~ 10771675 (+)
AMCG00008810 NA other downstream 289689 12539598 ~ 12549618 (+)
G51734 NA other downstream 465585 12715494 ~ 12716786 (+)
G51756 NA other downstream 592806 12842715 ~ 12846233 (+)
G51812 NA other downstream 675329 12925238 ~ 12926794 (+)
AMCG00008837 march9,LOC107664138,LOC107593952,LOC107714987,LOC106583285 other downstream 730895 12980804 ~ 12992725 (+)

Expression


Co-expression Network