G51665


Basic Information

Item Value
gene id G51665
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12425933 ~ 12426222 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU64639
atataaCCAGAGGAAAGTACTTGAATTTTGTTTTCGATATATTCTTTTATTTCGTAATTTATGATCGTCCCgtgcttatattttattttccacgtTTTGTAAGTGCGaaacatgcatattttgtacaaacaatggaacaagacaaaaaaggaaaaaatggcAGGAACGTTTGTCTGTATGTTTACGTCTATGTGATAATAGTTTTTTGATGTACTTATTCgtgtatttttacattcttaTCACTAGATCCTGTAAAATTATGTTATCTTGTAGATTGTagctatatttaa

Function

GO:

id name namespace
GO:0021591 ventricular system development biological_process
GO:0021592 fourth ventricle development biological_process
GO:0007399 nervous system development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64639 True 290 lncRNA 0.29 1 12425933 12426222

Neighbor

gene id symbol gene type direction distance location
AMCG00008807 NA coding upstream 2527 12422714 ~ 12423406 (+)
AMCG00008809 NA coding upstream 10828 12399412 ~ 12415105 (+)
AMCG00008808 hoxc11,hoxc11a,LOC108433364 coding upstream 39631 12385580 ~ 12386302 (+)
AMCG00008803 NA coding upstream 66568 12358727 ~ 12359365 (+)
AMCG00008804 hoxc13,LOC107715003 coding upstream 87197 12337886 ~ 12338736 (+)
AMCG00008806 hoxc8,hoxc8ab coding downstream 8401 12434623 ~ 12435063 (+)
AMCG00008805 hoxc6ba,LOC108433405,LOC103034651 coding downstream 36816 12463038 ~ 12465622 (+)
AMCG00008812 NA coding downstream 42594 12468816 ~ 12469543 (+)
AMCG00008811 hoxc4 coding downstream 78034 12504256 ~ 12505029 (+)
AMCG00008819 NA coding downstream 142806 12569028 ~ 12569687 (+)
G51614 NA non-coding upstream 176024 12190733 ~ 12249909 (+)
G51586 NA non-coding upstream 345729 12078697 ~ 12080204 (+)
G51584 NA non-coding upstream 348420 12075488 ~ 12077513 (+)
G51582 NA non-coding upstream 363644 12062074 ~ 12062289 (+)
G51483 NA non-coding upstream 709451 11712712 ~ 11716482 (+)
G51673 NA non-coding downstream 12629 12438851 ~ 12439523 (+)
G51685 NA non-coding downstream 77694 12503916 ~ 12504176 (+)
G51710 NA non-coding downstream 133249 12559471 ~ 12559699 (+)
G51718 NA non-coding downstream 220301 12646523 ~ 12647964 (+)
G51735 NA non-coding downstream 294860 12721082 ~ 12722980 (+)
AMCG00008784 NA other upstream 721520 11694654 ~ 11704413 (+)
G51445 NA other upstream 960445 11460363 ~ 11465488 (+)
G51297 NA other upstream 1385259 10984890 ~ 11040674 (+)
AMCG00008752 LOC107666323 other upstream 1579497 10828568 ~ 10846436 (+)
AMCG00008749 krt8,LOC108429286,LOC107705699,LOC107666380,LOC107681386,LOC107559866,LOC108411779,LOC106935308,LOC103152763,LOC102227940,LOC106915440 other upstream 1654258 10692377 ~ 10771675 (+)
AMCG00008810 NA other downstream 113376 12539598 ~ 12549618 (+)
G51734 NA other downstream 289272 12715494 ~ 12716786 (+)
G51756 NA other downstream 416493 12842715 ~ 12846233 (+)
G51812 NA other downstream 499016 12925238 ~ 12926794 (+)
AMCG00008837 march9,LOC107664138,LOC107593952,LOC107714987,LOC106583285 other downstream 554582 12980804 ~ 12992725 (+)

Expression


Co-expression Network