G51673


Basic Information

Item Value
gene id G51673
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12438851 ~ 12439523 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU64647
actgcaataaaatgtaaattacttattttttaaaacaaaaatctcctTCAAAGGGAATTCTCACTATtcaatcttattattattattattattattattattattattattattattattattattattattattatgtaggatgtttttttcttgagtCAAGGAGACAAAGAAACATGGTTGATGTTTTAAACTCTTAGCCAGCTACCAAGTAGCCAAAATTCAACTGTTACTCTGTCACTACCTAAATCAATGAAAATACGTTTTCTGTTTAAGAAGTACACTAATCAATTTTGTTGctgcttatttttattcatCCCCCCCCCAACAACTTAAACTGCCTAGAAAACGCACACTTCTGTGCTAAATGTTACAAGTACTatatttagaattattttataattataattattattttatcgtGCTGATGGTATAGAGTAGAACTAAATTGCACTGAATATAATCTCACGTAtgtccttatatatatattgttgtttgcAATATGCTCGTTTTGTTggtgtttcttatttttaagtgGGAAAAGTTGAGTGTTCACTACCTGAATGTTtagaggaaaaaacacattaaaaaatgtaagatgACTTTTTCCTTCACCCGTCCTTTTTGTCATGTATTCGTGTTGCGCtgagaaaataaactgattttaaacgAG

Function

GO:

id name namespace
GO:0005540 hyaluronic acid binding molecular_function
GO:0031406 carboxylic acid binding molecular_function
GO:0043177 organic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64647 True 673 lncRNA 0.28 1 12438851 12439523

Neighbor

gene id symbol gene type direction distance location
AMCG00008806 hoxc8,hoxc8ab coding upstream 3788 12434623 ~ 12435063 (+)
AMCG00008807 NA coding upstream 15445 12422714 ~ 12423406 (+)
AMCG00008809 NA coding upstream 23746 12399412 ~ 12415105 (+)
AMCG00008808 hoxc11,hoxc11a,LOC108433364 coding upstream 52549 12385580 ~ 12386302 (+)
AMCG00008803 NA coding upstream 79486 12358727 ~ 12359365 (+)
AMCG00008805 hoxc6ba,LOC108433405,LOC103034651 coding downstream 23515 12463038 ~ 12465622 (+)
AMCG00008812 NA coding downstream 29293 12468816 ~ 12469543 (+)
AMCG00008811 hoxc4 coding downstream 64733 12504256 ~ 12505029 (+)
AMCG00008819 NA coding downstream 129505 12569028 ~ 12569687 (+)
AMCG00008814 hnrnpa1 coding downstream 215044 12654567 ~ 12659732 (+)
G51665 NA non-coding upstream 12629 12425933 ~ 12426222 (+)
G51614 NA non-coding upstream 188942 12190733 ~ 12249909 (+)
G51586 NA non-coding upstream 358647 12078697 ~ 12080204 (+)
G51584 NA non-coding upstream 361338 12075488 ~ 12077513 (+)
G51582 NA non-coding upstream 376562 12062074 ~ 12062289 (+)
G51685 NA non-coding downstream 64393 12503916 ~ 12504176 (+)
G51710 NA non-coding downstream 119948 12559471 ~ 12559699 (+)
G51718 NA non-coding downstream 207000 12646523 ~ 12647964 (+)
G51735 NA non-coding downstream 281559 12721082 ~ 12722980 (+)
G51736 NA non-coding downstream 299674 12739197 ~ 12745766 (+)
AMCG00008784 NA other upstream 734438 11694654 ~ 11704413 (+)
G51445 NA other upstream 973363 11460363 ~ 11465488 (+)
G51297 NA other upstream 1398177 10984890 ~ 11040674 (+)
AMCG00008752 LOC107666323 other upstream 1592415 10828568 ~ 10846436 (+)
AMCG00008749 krt8,LOC108429286,LOC107705699,LOC107666380,LOC107681386,LOC107559866,LOC108411779,LOC106935308,LOC103152763,LOC102227940,LOC106915440 other upstream 1667176 10692377 ~ 10771675 (+)
AMCG00008810 NA other downstream 100075 12539598 ~ 12549618 (+)
G51734 NA other downstream 275971 12715494 ~ 12716786 (+)
G51756 NA other downstream 403192 12842715 ~ 12846233 (+)
G51812 NA other downstream 485715 12925238 ~ 12926794 (+)
AMCG00008837 march9,LOC107664138,LOC107593952,LOC107714987,LOC106583285 other downstream 541281 12980804 ~ 12992725 (+)

Expression


Co-expression Network