G51693


Basic Information

Item Value
gene id G51693
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12454919 ~ 12476199 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU64668
GCGAGCCACTCAGGGCCCCCGCTTGGGGCAATCGGCATAAATAACCTTCAAAAGTTTAAAActaccaaaaaacaaaccaaaatccGCACACAAAAGCCATATACCCCAATAGTGCCGAAACTTCTGTGGGAACTGGAAGCTGcgtttgtttaaatgcagagttccttttttttcctgctctttctttttttttcttcttctttatttatttttagcacacGTTAGGACTCAAGAAACAGCGGTCTGGTTCAGAAGTGTATAGTACAACTGAAAAGTCGTAGGATATTTCTCAACACTCCGGCTGTAAACATGGACCAGGAGGACTCCAGGAGGCGCCGGGCTGAAGGCCACCGAGCCGCCAGTGGCTCTCTCCGGGAGTCCGGGGCTGCTGGGCCGTGTCAGCCTCACCTTAACAAGGGGCGGAATGTCCCGCGTCAGCCCAGCCACAGACACTAATGAGGCGATAGAAAAGTGTACACCGTTACTGTTCAACTGCACccacttaatttgttttagttctTAATTTCGTTGcttagaaaattatattttatattgaatgggtatgtatgtatgtaagtatgtaagtatgtatgcatgtgtgtatgtttgtatttgattttcattttatgtatttgatttttatgtatttgtttgttgttcgtTCATATGTTGAATTTGAATGCTCTTAACACAAATGTGTTGAACATAACGCAAAGAGGACAACTCAAAACAGGCATTATATTGGAATATTGCACATAAATACACAGGCATATACGGGAtataaacatcaacaacaataataataatcaagaaaAATCTTCCCTCTGTCGAATAGAGAATTAATCTCCATTGAAAAGACGTTAGTTTAATGGACTCCCAGATATATTTTCTGCGGGATTGTGGTCTATAACACGATAATTAAAACTACACTGAATCAAAATGGGCCAAAGTACTATTAACACATATTCTGTGTACAATTTCCACACATTAGCTTTTAAGAGTGTAATGCAATATTTACTAGCTGTAACAGGCGAATCCCAAGCCTCATCCACACATCTCTGTACGCTTTCCAGTTGCTACATATTTAGACAAACTGCTGGCATAGAAAGACCAGCCCTGACGAAtatcttatttattcatgcatgtATTGAAGCCTGCACAGTCCTACATTCCCGTTGGTTTCTATAATTTCGGTGCATATGTAATTTCTACCGGtataattgcttttcttttctttgggATTTCAGCGGTTTTCTGTACCTTTGGGGGAttcaacacaataaaatgattCTCCTGCTCCGCTTGTCAATTTATTTCCACACAGGAATCGGGAAAACATTACCATTCGCCACTGTCATCAGTTCTCAac

Function

GO: NA

KEGG:

id description
ko00260 Glycine, serine and threonine metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU64668 True 1369 lncRNA 0.40 2 12454919 12476199

Neighbor

gene id symbol gene type direction distance location
AMCG00008802 NA coding downstream 195588 12248300 ~ 12259331 (-)
AMCG00008801 NA coding downstream 214860 12237425 ~ 12240059 (-)
AMCG00008796 NA coding downstream 293397 12150161 ~ 12161522 (-)
AMCG00008797 NA coding downstream 308579 12107882 ~ 12146340 (-)
AMCG00008794 NA coding downstream 388803 12035166 ~ 12066116 (-)
AMCG00008817 cbx5,LOC107664188,LOC107714996 coding upstream 165788 12641987 ~ 12651818 (-)
AMCG00008818 NA coding upstream 177414 12653613 ~ 12653945 (-)
AMCG00008816 NA coding upstream 189636 12665835 ~ 12668432 (-)
AMCG00008822 NA coding upstream 240918 12717117 ~ 12721189 (-)
AMCG00008823 NA coding upstream 249325 12725524 ~ 12735479 (-)
G51674 NA non-coding downstream 15396 12438751 ~ 12439523 (-)
G51634 NA non-coding downstream 111577 12343140 ~ 12343342 (-)
G51588 NA non-coding downstream 361134 12081212 ~ 12093785 (-)
G51574 NA non-coding downstream 444525 12002925 ~ 12010394 (-)
G51403 NA non-coding downstream 1196701 11226487 ~ 11258218 (-)
G51700 NA non-coding upstream 27263 12503462 ~ 12503679 (-)
G51706 NA non-coding upstream 63408 12539607 ~ 12540344 (-)
G51707 NA non-coding upstream 71201 12547400 ~ 12549617 (-)
G51724 NA non-coding upstream 181027 12657226 ~ 12660117 (-)
G51809 NA non-coding upstream 431122 12907321 ~ 12908333 (-)
AMCG00008777 dctn2,LOC102785932 other downstream 1128560 11235642 ~ 11326359 (-)
G51250 NA other downstream 1655765 10797632 ~ 10799154 (-)
AMCG00008748 LOC107666380,LOC108429286,LOC107705699,LOC107681386,LOC107559866 other downstream 1736718 10670949 ~ 10718201 (-)
G51241 NA other downstream 1742434 10675756 ~ 10712485 (-)
AMCG00008744 NA other downstream 1851546 10560866 ~ 10603373 (-)
AMCG00008815 NA other upstream 125092 12601291 ~ 12605260 (-)
G51797 NA other upstream 414612 12890811 ~ 12891597 (-)
G51799 NA other upstream 419136 12895335 ~ 12897134 (-)
G51867 NA other upstream 524627 13000826 ~ 13001888 (-)
AMCG00008845 NA other upstream 614338 13090537 ~ 13097934 (-)

Expression


Co-expression Network