G51724


Basic Information

Item Value
gene id G51724
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12657226 ~ 12660117 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU64716
ACTCATCTACACAAGAACTACAACTTgcacaactttaaaaaaaagaaaaatgaaagatggTTTATTTCGACTTGATTGGatgcagttacatttaaaaaacaccataTGGGTGCGtgtcccccccccaaaaaacaaactaaaaaaaaaatctacataaaacCTCATTGGAATGCTTTACACTTTTCACAGAAACATAGCAACTACAAAATATCCTGCTTAACAGCATATGACAAACatagaaaacatgtttgaagccccacatgattttttttttgtttctcctctaTGTCTttgtacattgatttttttttttttttctcttcatgtaGCAGCTGTAACCTGCCACAACTGTGCTTGGCTGAGCAGATCTAGGGTGTAAACCTGCAGCTTCCCTGTCActtctctcgctctcctctCCTAAGTACTGAGTCCTGTTGAACAATACGGAACAACATTGTTAAACTGTGCACTGTCTTTTCAGGAGGTCAATAGAATTTAAAGAGCTAATTAACACACTCTGGGAGGAACCCAGAAGCAAGCCTTCATTGCAGGGCCCAGCACGCCACAGGGACTACCATTAGAGATCTGCATTCAGCGAGAGATACAAGGTGTTGGGGTGGTGGTGGTAAAGAGGCAATAACGCATTGCATTCAATTAAGTTCATTAGCAGAGACCCACTTCTGGGTTAAACTGTGCAGCTGCGGTCAAACACTGGAGAACAATCCTGCACACCATCTTCAAAGAAAAGGAGGGAGATAAAGTGTCATGAAGGTTTGCTACTGGAGCCTCTTCTCAGACTTACATGTTAAACAATATCTTGGAGCTTTACAGAGGTACGAGGTTTGCTGTAAagcacccccccctccctttaaCCTAGCCTACAGGGAGAAGGCTTGTCTGGAGAGTTAAGACTGGCTCGCATGTTGGCCATGTAGAGAAACCACTATTAGACACTTTTGTAGATAAATAGTTAAGGTGCGTGTGTGGGGGATAATCAGTCCTTACCTCTTCATGGTTTAGAACCTCCTGCCCCCAGCACTGTTCCCATAGCCCCCACTGCTGGAGCCACCCCCATATCCACTACCGTATGGGCCTCCACTGTTCCTGCCGCCACCGCCGCCCCCAAAGTTGCTCCCCTTCATCGGGCCATAGCTGGAGGAGGACTGGCTGTTGTAGTTGCCAAAGTCATTGTAGTTACTGCCACCGAAGTTGCCTCCAAAGtttcctccacctcctccaccgTTGTTGTAGCTATCGTAGCCTCCTCCATTCCCTCCGTATCCTCCTCCCTGGTTGCCATAACCCTGTCCTCCACCGTAACCACGGTTTCCACCGTAGCCAGGGCCCCCGCCATAGCCACCTGAAGGAGTGAGAGACTGAGTCTGGTACTCTGATGAAGCATTGTAACCAAGATCCCTCGCATCTCCACCAAACCCATTGTAGCCACCATCTCCTCCATAACCACCACGGCCTCCAAACCCACCCCTCATGTTCATGCCTGCACTGGCCATCTCCTGCTTTGAGAGGGCCTTCCTCACTTCACAATTGTGCCCATTGACAGTGTGGTACTTCTGGACTgtaggg
>TU64717
ACTCATCTACACAAGAACTACAACTTgcacaactttaaaaaaaagaaaaatgaaagatggTTTATTTCGACTTGATTGGatgcagttacatttaaaaaacaccataTGGGTGCGtgtcccccccccaaaaaacaaactaaaaaaaaaatctacataaaacCTCATTGGAATGCTTTACACTTTTCACAGAAACATAGCAACTACAAAATATCCTGCTTAACAGCATATGACAAACatagaaaacatgtttgaagccccacatgattttttttttgtttctcctctaTGTCTttgtacattgatttttttttttttttctcttcatgtaGCAGCTGTAACCTGCCACAACTGTGCTTGGCTGAGCAGATCTAGGGTGTAAACCTGCAGCTTCCCTGTCActtctctcgctctcctctCCTAAGTACTGAGTCCTGTTGAACAATACGGAACAACATTGTTAAACTGTGCACTGTCTTTTCAGGAGGTCAATAGAATTTAAAGAGCTAATTAACACACTCTGGGAGGAACCCAGAAGCAAGCCTTCATTGCAGGGCCCAGCACGCCACAGGGACTACCATTAGAGATCTGCATTCAGCGAGAGATACAAGGTGTTGGGGTGGTGGTGGTAAAGAGGCAATAACGCATTGCATTCAATTAAGTTCATTAGCAGAGACCCACTTCTGGGTTAAACTGTGCAGCTGCGGTCAAACACTGGAGAACAATCCTGCACACCATCTTCAAAGAAAAGGAGGGAGATAAAGTGTCATGAAGGTTTGCTACTGGAGCCTCTTCTCAGACTTACATGTTAAACAATATCTTGGAGCTTTACAGAGGTACGAGGTTTGCTGTAAagcacccccccctccctttaaCCTAGCCTACAGGGAGAAGGCTTGTCTGGAGAGTTAAGACTGGCTCGCATGTTGGCCATGTAGAGAAACCACTATTAGACACTTTTGTAGATAAATAGTTAAGGTGCGTGTGTGGGGGATAATCAGTCCTTACCTCTTCATGGTTTAGAACCTCCTGCCCCCAGCACTGTTCCCATAGCCCCCACTGCTGGAGCCACCCCCATATCCACTACCGTATGGGCCTCCACTGTTCCTGCCGCCACCGCCGCCCCCAAAGTTGCTCCCCTTCATCGGGCCATAGCTGGAGGAGGACTGGCTGTTGTAGTTGCCAAAGTCATTGTAGTTACTGCCACCGAAGTTGCCTGAAAAATAACCCAGTGAATTAAAGCCCAAACTAGCAGATGCTTTTATTCTGCTAGGcaagctgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64716 True 1584 lncRNA 0.47 5 12657226 12660117
TU64717 False 1279 lncRNA 0.44 2 12658484 12660117

Neighbor

gene id symbol gene type direction distance location
AMCG00008818 NA coding downstream 3281 12653613 ~ 12653945 (-)
AMCG00008817 cbx5,LOC107664188,LOC107714996 coding downstream 5408 12641987 ~ 12651818 (-)
AMCG00008802 NA coding downstream 397895 12248300 ~ 12259331 (-)
AMCG00008801 NA coding downstream 417167 12237425 ~ 12240059 (-)
AMCG00008796 NA coding downstream 495704 12150161 ~ 12161522 (-)
AMCG00008816 NA coding upstream 5718 12665835 ~ 12668432 (-)
AMCG00008822 NA coding upstream 57000 12717117 ~ 12721189 (-)
AMCG00008823 NA coding upstream 65407 12725524 ~ 12735479 (-)
AMCG00008821 NA coding upstream 79056 12739173 ~ 12745962 (-)
AMCG00008827 NA coding upstream 186890 12847007 ~ 12856225 (-)
G51707 NA non-coding downstream 107609 12547400 ~ 12549617 (-)
G51706 NA non-coding downstream 116882 12539607 ~ 12540344 (-)
G51700 NA non-coding downstream 153547 12503462 ~ 12503679 (-)
G51693 NA non-coding downstream 181027 12454919 ~ 12476199 (-)
G51674 NA non-coding downstream 217703 12438751 ~ 12439523 (-)
G51809 NA non-coding upstream 247204 12907321 ~ 12908333 (-)
G51811 NA non-coding upstream 260428 12920545 ~ 12920791 (-)
G51851 NA non-coding upstream 263087 12923204 ~ 12924656 (-)
G51875 NA non-coding upstream 361907 13022024 ~ 13023104 (-)
G51946 NA non-coding upstream 509313 13169430 ~ 13213278 (-)
AMCG00008815 NA other downstream 51966 12601291 ~ 12605260 (-)
AMCG00008777 dctn2,LOC102785932 other downstream 1330867 11235642 ~ 11326359 (-)
G51250 NA other downstream 1858072 10797632 ~ 10799154 (-)
AMCG00008748 LOC107666380,LOC108429286,LOC107705699,LOC107681386,LOC107559866 other downstream 1939025 10670949 ~ 10718201 (-)
G51241 NA other downstream 1944741 10675756 ~ 10712485 (-)
G51797 NA other upstream 230694 12890811 ~ 12891597 (-)
G51799 NA other upstream 235218 12895335 ~ 12897134 (-)
G51867 NA other upstream 340709 13000826 ~ 13001888 (-)
AMCG00008845 NA other upstream 430420 13090537 ~ 13097934 (-)
AMCG00008844 NA other upstream 475615 13135732 ~ 13184356 (-)

Expression


Co-expression Network