G51828


Basic Information

Item Value
gene id G51828
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12978864 ~ 12980775 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU64844
ACGGAGAGCGGCGTCCGGCAATGCGCAGCGGATCGGCGGAGCTCCGGCACGGCGAGCGCGACAGAGGGAGGCAAAAGAGCACCACATTCCGGGGAGAGCGAAATAATATagacatatatttatacatccaTTAACCGAGCAGCTACCAGCACCTGTAAACGCCTAAATTAGCATGCTGTACCGGAAGAAGAGGCCACATTCGCCCATTGTCAAAGTCATCCATTTCAATCAGGGAACGCCGCCGCTTCCAGCAGCACCCTTATTTTTGTTGTGATccgtattgttttaaattgtcatttttttgaCTAAATTCTTCATCGTCAGTTTTTTTCGGTCTCCTTTAACAGCTGCGTGCAGATGGAAACCAGTGCATCATGCTTCTCTGCTAAAGGATATTgctgaaggtttttttttttttttttttttccttgggtGCAACATCTTTTCCCGTTGCATGTTGTGCAGGATCATTgcaggagagaagagagagagagagagagggggagagagaggggggggttgGAATCAGGATGGATACGCGATGGAAAAAAGAGATGTGTTTTCAAACCCATTTTCGCAGTCGTATCCGATACAATGTAACGCGATGCACAGCAGCCGGATTCTAGATTCCATTTCTTGGGGAGGTGAAATGGACAGTtactattactgctactactgctactactactacgaaTACTAAGcataacaataatgatgataataacaatgattCATAAGAATTTAACAACGAGAGAAGCGGGATGCTGCTGAGGAGTCAACCCACAAATTGAGACCCGATTTGAATTGCGTCCGGATCCACCAGTTCCTccaatttgtaataataataatcattattattattattattattattattattattattaataataataatttgtcctCGTCTCTTGTCCCTATGGATCTTAACACTGGAGAGTGATAGAAAGATATGGCTTATTGGAACTCGTATTGATAACGtggtgtcttttattttatttcatgtatttattaatttatttttattttctgtctgtggTATTcgctctctcttcccccctctctctctctctctctctctctctctctctctctctctctctctctctcgtttttgCTTCTTAGTGCAGAACATTTAACAGGCAATAGATTCTTAAAATATGTGTCATAAGAACCTTgttcacaataataatagtaataacaataatcattattatatgaataataataaacaaggcTCTGCATATTATTTgacataatatacaatatacttaACTACCGTGTCGTATCATACcatataatgtaaatctgactcttaaaatattaatcagatAGTTGTTGATACAGCTTGGTGTCTGccgggggggggtggggggtattgGTTCCAGGCGTTTACGTTAACATTGTGCACAATaccattacaatgtatttatttctggtttCGGATTGGAGACCGGTAAGATATACGATAGGGGGTTCTGGCCGGGTGTGAGACACAGCTTGTATCTGCAGTTCAGACATCAGCACATGCCCCGTACCTTCCACAGAAGCCACAGACCCTCGGGAAACGTGTcctgttattaataatactactacgAATTATAATCGGTTTTAATGGTCCGCAGCCCcgcttttattgttttgttttctttatttagtgtcttggtgtttgtttgtgtatgtctaCACTGATGTCAGTGTGCATAGGCGTtttgttccatttattttaaccataaccccccacccccaccccttaATTCCCTACCCCCCATACcccttctcacacacacacacacatacaccattTGTTATTTCTAGGTGTCTCATCAATTCTCCAGATTccatatactactactactactactactactactactactac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64844 True 1882 lncRNA 0.41 2 12978864 12980775

Neighbor

gene id symbol gene type direction distance location
AMCG00008831 NA coding upstream 15881 12958757 ~ 12962983 (+)
AMCG00008829 NA coding upstream 66128 12909685 ~ 12912736 (+)
AMCG00008830 pip4k2c,LOC103385206 coding upstream 70983 12899895 ~ 12907881 (+)
AMCG00008828 NA coding upstream 83252 12891002 ~ 12895612 (+)
AMCG00008824 NA coding upstream 138664 12820798 ~ 12840200 (+)
AMCG00008836 NA coding downstream 16323 12997098 ~ 13002084 (+)
AMCG00008838 NA coding downstream 24827 13005602 ~ 13014133 (+)
AMCG00008835 NA coding downstream 82720 13063495 ~ 13065081 (+)
AMCG00008840 NA coding downstream 93305 13074080 ~ 13097915 (+)
AMCG00008841 ctdsp2,LOC106583267,LOC106572594,LOC105013607 coding downstream 124751 13105526 ~ 13117044 (+)
G51814 LOC106567079 non-coding upstream 51019 12927618 ~ 12927845 (+)
G51796 NA non-coding upstream 81757 12896349 ~ 12897107 (+)
G51736 NA non-coding upstream 233098 12739197 ~ 12745766 (+)
G51735 NA non-coding upstream 255884 12721082 ~ 12722980 (+)
G51718 NA non-coding upstream 330900 12646523 ~ 12647964 (+)
G51904 NA non-coding downstream 159788 13140563 ~ 13187139 (+)
G51968 NA non-coding downstream 328841 13309616 ~ 13310773 (+)
G51969 NA non-coding downstream 330554 13311329 ~ 13312458 (+)
G51970 NA non-coding downstream 332815 13313590 ~ 13315052 (+)
G52044 NA non-coding downstream 495975 13476750 ~ 13476978 (+)
G51812 NA other upstream 52070 12925238 ~ 12926794 (+)
G51756 NA other upstream 132631 12842715 ~ 12846233 (+)
G51734 NA other upstream 262078 12715494 ~ 12716786 (+)
AMCG00008810 NA other upstream 429246 12539598 ~ 12549618 (+)
AMCG00008784 NA other upstream 1274451 11694654 ~ 11704413 (+)
AMCG00008837 march9,LOC107664138,LOC107593952,LOC107714987,LOC106583285 other downstream 29 12980804 ~ 12992725 (+)
G51928 LOC108272117,LOC107678215,LOC107581315,LOC107713111,LOC107551923 other downstream 241545 13222320 ~ 13224946 (+)
G51939 NA other downstream 273039 13253814 ~ 13257640 (+)
AMCG00008856 rps26,RPS26,LOC106567051 other downstream 325720 13306495 ~ 13309430 (+)
G52349 NA other downstream 1501146 14481921 ~ 14483255 (+)

Expression


Co-expression Network