G51939


Basic Information

Item Value
gene id G51939
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13253814 ~ 13257640 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU64982
ACAGTTCATACgtaaaacaagtttattttgaaCAAGCCGGGTTTTACAGTCACAGCAGAAACTGCGACtccagtttttatatatattctttattgtaTCATCATTTTTTAACAGACACTGTCTAGCCATCAAAAATTGACCTGAAACACTAAACCTACTACTAAATAATCAAGCACAGCTTTGGGAACACAAgagccaataaataaataaataaataaataaataaataaataaaacgccaTGGATTGAAATcagacaaagacaaacaaatgtaaacaaaatcataaaccATGATACAGTACAGTTGTCCACAACGAGCCAAGGAATGAAGAAACCaatccctccccccccaccctgatCGCTTCCACCTGCAAACCATcttgaaaagagaaagaagcTGAATTGATGAATACAGTAACGCTAAATCAACAGAACTGCTATAAggccacacaaaataaacatcgCTTCCACATACTAGTTTTACTGTAAAAGTTGTGTGCGGGATTTTACTCACGCGAGTCCAGGCGGAAAGACCGTGTTTTCTTTTAGCTGACGATTTTGTATTTACAAGTAATTtggaacccccccccaccccccgagtGGTGGTTACCGAGGTGATTCCCTAGTAACATGAAGCAGGGTGTGGCTTCTGGTTGTGCCACTCAGGATCGAGAGACACAAACTGGGCCGAGACGCATTCTGGTCTtagttttcaattttaaaaccaaactgaccaactaaagaaagaaataacacTTCAACGCTCACCACTGGGGTGAAGGACGTCTCATCTTTCTCCAATTTGGTCTTGAAAAGGAATCAAATACCAGGGCATTAGAACCCATATAATCAATATGTAGATAATCCAAAACAAGGGACTTTGATCAGTTTTTATCATGTAGCCTAAGACCCACAACCTTTTACACCcactcctccctcccttcctcctcctACAATCCGATTGGCTCCCTGCAGCGTGGGCACGTGTGCTTTTGTGGGCCCCTACACTGACAGctgtggcccagtcagagcagAGGGGACGGCAGAAAGACTCAAACACATGACTGATCCCATCCCTCTCGTTAGCTACCTCTCATATGCAGCTTCAGGGAATGCATGAAggaacaaacaaattaataaataattaaaagcatacaTACACTACCAAATCCTGCCCATTGCctgtccaaaaacaaaataaataaataaaatagataaaaaacaataatgaaaggcagtgcagtgtgtcagtgtgcagctCAGTGGGTTAATGTGTCCATCTCTGAGCAGGCAGGTCCAGCACTGTCCAGCACTGTCACAAGGTGCGTTTCTGCAGTGGCTGTGAGGCACTGGACTGCCCTCAGTGGCACTTCTATCCAGTCACAGAGCAGGTACAGCACAGCCCATGGGAACTCTGTCTCTGGCTGGCTGGCTTTCAATCAGTTGGCCTACAAGGCAAGAACAAGTACAATGCAGATAATATCCAGAGCTCTCTCTACCTGTCCATCTATCTAGACACAGTACAGCACTATAGGCAATACAGGCAAaactatctatctgtctatctatcgcTCAATCAATTTTTTCAGAGAGCAAGTACAGCAGGCAATGGATgctccatctatctatctatctatctatctatatatgtacTTACCTACCTATCTATCAGTCTATTCACATGGCAGCTACAGCCGGTCCACCCCTGCCTTTACCCATAGTGCAGACATGGCTCATGCCATCACAGCGGTCACCCCTGACCTGCACTCCCATGCAGGTACAGCAAGGCGGCACTGCAGAGccagcagcacagagcagacaTAACAGCTCATCTACCTACGTCATCTAGCTagctacctacctacctacctacctaacCTAGCTCCCGGCCTATCTATCTACCCAGAGAAGAATTCTAGCACTACAGCACAGGCAATGTCGTCTACCTAACCGTCCACACAGCAGGTGCAGAGCATGCAATGGGAACTCGGTTTACAGCACAGCTACAATCGACATAGCAAAAGCTACCATCTACCATCCTACCTACCTACTGAACTACCAACCTACCTACCTACTCACCCACCTATCTGCAGGTGCAGCTCATGCAAAGCTCAAGACAACACAGAGTCGGTTTACAGTTTGCAATGGCAGCTACACTTAATACAGACAGCCTTTTCATGCGCTGAGAAGATCTGTGCACagatcagacacacacacacacacacacacaaacagtgtaAGCTCCACCTATCCAAAGGACATACACatatagcacagtacagtgcaggGGACAGCTCTGCCTGTCTGCACACTCACTGTTGCTCTTGCATACAAACCTCATACAACCCCCTCCTTGATTACTGCCCTGAATGTATGCCCTACATTGACAGGGGGTGAGAGGGCCTCTTGTCTctaaaaagacagacagacagacagaagaggCCGGACTATTATCTGTTAATACCTTATCTAGTGAGATTCAGAGGGTCTCCTGCTCAGAGGTTTCTCACAACTGTCCATCTACTGACATGCACAAAGCACCTACTGTTCTCACACAGTACcaagcactcacacacacacaaaataaataaaacaaacaaaatctgatAATGATCAATTACATTGCTGAAGAAAACATGAGAGCATCTGTAACCCAGCTGCACAGCCCAGCGGTGCTAACCCAGCGCTGCAGAGTCTCCCCATCAGGCAACAGTGCGGAGACGCCCACAGTCAGGCCAAGACAGGAATGGCTACGAAATGAACGTTGCGAGACCctcacacccacccacccctccGCCACCAGTACAAAAGGTAGAAATCTGAAAACTGCAAGGAGCCAATCAGACACAAGAACTGAAAAGATTTCACCACGTGGGAACCAGTGATATGAGCACAGCAAACCTGCATGTGTGATAACTCCACAGGTCTAGGTATAGCTTTATTATTGGTTCGCTCGGACTGTGATATTCGATAGTAAAAAAACTAACTAAACGTGTCCTTGTATATTCCATCACAAGAGAGAAGTTCTGGAGCTCACAGGGATTTCAGTGCAGAGGgagaaaatacttaaaaacgCACGATTTTTCGGTCAGTTCAGGACTTGAGACTGGATATGATGGGTCTCATGATAATAAACAAGGAAACTGCGACTCAAGTAAAGATACCCattgaatttagtttttatggtttgtgtgtttgttggtttgattaattatttaggGACTAGCCTTTAAAGATGTTTGGGGAACACTTGTTTGATGAATGGACATGAATCCACCTCCCCTACGTTTCTCATACTTCACCTCGAGTTCACAGAGGTTTGGGCGTGACAAGGATTTCTCTGCAGTGCCAGAATCACACCTGATGTCGGTTGGCCTCAAACGTTGCGGGTCTTTAAAACGCGAGTTACAAAGCCGAGCGACACATGCAGACCTCTGATCAACCCTGAACTTCCAATTTCTAACcagtaaaattaaatgcatctgtgatttttctttttgatgatctgtatttttaaaaatccttttCTAATCGCAACCCCAACTGGAgatttttcaagtttttctgTGAACTTCAGGTGAAAGTGCAGGAGGAGCCTAGCTGACTATCCTTATGCTGGGGACCTGGGGGGGGAGGGTACAAGTCCAGCCAGTTAcagaggaggacgaggaggagatggagaaggaggaggagaaacaaagcaaaccaaaacaaactaaccaaaaactaaaaaagaggTTTAAGAAAGAGGGTGCAAGAGGCGAGGGGTTTGCTGCAACAACCCGACGCCCCTCTTCCCGAAAAAACACAGTTCCCTGAAGAACCCA
>TU64983
CCACCTGCAAACCATcttgaaaagagaaagaagcTGAATTGATGAATACAGTAACGCTAAATCAACAGAACTGCTATAAggccacacaaaataaacatcgCTTCCACATACTAGTTTTACTGTAAAAGTTGTGTGCGGGATTTTACTCACGCGAGTCCAGGCGGAAAGACCGTGTTTTCTTTTAGCTGACGATTTTGTATTTACAAGTAATTtggaacccccccccaccccccgagtGGTGGTTACCGAGGTGATTCCCTAGTAACATGAAGCAGGGTGTGGCTTCTGGTTGTGCCACTCAGGATCGAGAGACACAAACTGGGCCGAGACGCATTCTGGTCTtagttttcaattttaaaaccaaactgaccaactaaagaaagaaataacacTTCAACGCTCACCACTGGGGTGAAGGACGTCTCATCTTTCTCCAATTTGGTCTTGAAAAGGAATCAAATACCAGGGCATTAGAACCCATATAATCAATATGTAGATAATCCAAAACAAGGGACTTTGATCAGTTTTTATCATGTAGCCTAAGACCCACAACCTTTTACACCcactcctccctcccttcctcctcctACAATCCGATTGGCTCCCTGCAGCGTGGGCACGTGTGCTTTTGTGGGCCCCTACACTGACAGctgtggcccagtcagagcagAGGGGACGGCAGAAAGACTCAAACACATGACTGATCCCATCCCTCTCGTTAGCTACCTCTCATATGCAGCTTCAGGGAATGCATGAAggaacaaacaaattaataaataattaaaagcatacaTACACTACCAAATCCTGCCCATTGCctgtccaaaaacaaaataaataaataaaatagataaaaaacaataatgaaaggcagtgcagtgtgtcagtgtgcagctCAGTGGGTTAATGTGTCCATCTCTGAGCAGGCAGGTCCAGCACTGTCCAGCACTGTCACAAGGTGCGTTTCTGCAGTGGCTGTGAGGCACTGGACTGCCCTCAGTGGCACTTCTATCCAGTCACAGAGCAGGTACAGCACAGCCCATGGGAACTCTGTCTCTGGCTGGCTGGCTTTCAATCAGTTGGCCTACAAGGCAAGAACAAGTACAATGCAGATAATATCCAGAGCTCTCTCTACCTGTCCATCTATCTAGACACAGTACAGCACTATAGGCAATACAGGCAAaactatctatctgtctatctatcgcTCAATCAATTTTTTCAGAGAGCAAGTACAGCAGGCAATGGATgctccatctatctatctatctatctatctatatatgtacTTACCTACCTATCTATCAGTCTATTCACATGGCAGCTACAGCCGGTCCACCCCTGCCTTTACCCATAGTGCAGACATGGCTCATGCCATCACAGCGGTCACCCCTGACCTGCACTCCCATGCAGGTACAGCAAGGCGGCACTGCAGAGccagcagcacagagcagacaTAACAGCTCATCTACCTACGTCATCTAGCTagctacctacctacctacctacctaacCTAGCTCCCGGCCTATCTATCTACCCAGAGAAGAATTCTAGCACTACAGCACAGGCAATGTCGTCTACCTAACCGTCCACACAGCAGGTGCAGAGCATGCAATGGGAACTCGGTTTACAGCACAGCTACAATCGACATAGCAAAAGCTACCATCTACCATCCTACCTACCTACTGAACTACCAACCTACCTACCTACTCACCCACCTATCTGCAGGTGCAGCTCATGCAAAGCTCAAGACAACACAGAGTCGGTTTACAGTTTGCAATGGCAGCTACACTTAATACAGACAGCCTTTTCATGCGCTGAGAAGATCTGTGCACagatcagacacacacacacacacacacacaaacagtgtaAGCTCCACCTATCCAAAGGACATACACatatagcacagtacagtgcaggGGACAGCTCTGCCTGTCTGCACACTCACTGTTGCTCTTGCATACAAACCTCATACAACCCCCTCCTTGATTACTGCCCTGAATGTATGCCCTACATTGACAGGGGGTGAGAGGGCCTCTTGTCTctaaaaagacagacagacagacagaagaggCCGGACTATTATCTGTTAATACCTTATCTAGTGAGATTCAGAGGGTCTCCTGCTCAGAGGTTTCTCACAACTGTCCATCTACTGACATGCACAAAGCACCTACTGTTCTCACACAGTACcaagcactcacacacacacaaaataaataaaacaaacaaaatctgatAATGATCAATTACATTGCTGAAGAAAACATGAGAGCATCTGTAACCCAGCTGCACAGCCCAGCGGTGCTAACCCAGCGCTGCAGAGTCTCCCCATCAGGCAACAGTGCGGAGACGCCCACAGTCAGGCCAAGACAGGAATGGCTACGAAATGAACGTTGCGAGACCctcacacccacccacccctccGCCACCAGTACAAAAGGTAGAAATCTGAAAACTGCAAGGAGCCAATCAGACACAAGAACTGAAAAGATTTCACCACGTGGGAACCAGTGATATGAGCACAGCAAACCTGCATGTGTGATAACTCCACAGGTCTAGGTATAGCTTTATTATTGGTTCGCTCGGACTGTGATATTCGATAGTAAAAAAACTAACTAAACGTGTCCTTGTATATTCCATCACAAGAGAGAAGTTCTGGAGCTCACAGGGATTTCAGTGCAGAGGgagaaaatacttaaaaacgCACGATTTTTCGGTCAGTTCAGGACTTGAGACTGGATATGATGGGTCTCATGATAATAAACAAGGAAACTGCGACTCAAGTAAAGATACCCattgaatttagtttttatggtttgtgtgtttgttggtttgattaattatttaggGACTAGCCTTTAAAGATGTTTGGGGAACACTTGTTTGATGAATGGACATGAATCCACCTCCCCTACGTTTCTCATACTTCACCTCGAGTTCACAGAGGTTTGGGCGTGACAAGGATTTCTCTGCAGTGCCAGAATCACACCTGATGTCGGTTGGCCTCAAACGTTGCGGGTCTTTAAAACGCGAGTTACAAAGCCGAGCGACACATGCAGACCTCTGATCAACCCTGAACTTCCAATTTCTAACcagtaaaattaaatgcatctgtgatttttctttttgatgatctgtatttttaaaaatccttttCTAATCGCAACCCCAACTGGAgatttttcaagtttttctgTGAACTTCAGGTGAAAGTGCAGGAGGAGCCTAGCTGACTATCCTTATGCTGGGGACCTGGGGGGGGAGGGTACAAGTCCAGCCAGTTAcagaggaggacgaggaggagatggagaaggaggaggagaaacaaagcaaaccaaaacaaactaaccaaaaactaaaaaagaggTTTAAGAAAGAGGGTGCAAGAGGCGAGGGGTTTGCTGCAACAACCCGACGCCCCTCTTCCCGAAAAAACACAGTTCCCTGAAGAACCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64982 True 3827 lncRNA 0.45 1 13253814 13257640
TU64983 False 3463 TUCP 0.46 1 13254178 13257640

Neighbor

gene id symbol gene type direction distance location
AMCG00008842 NA coding upstream 121139 13123231 ~ 13132675 (+)
AMCG00008841 ctdsp2,LOC106583267,LOC106572594,LOC105013607 coding upstream 136770 13105526 ~ 13117044 (+)
AMCG00008840 NA coding upstream 155899 13074080 ~ 13097915 (+)
AMCG00008835 NA coding upstream 188733 13063495 ~ 13065081 (+)
AMCG00008838 NA coding upstream 239681 13005602 ~ 13014133 (+)
AMCG00008847 wnt1,LOC106567052,LOC106572674 coding downstream 23634 13281274 ~ 13288925 (+)
AMCG00008858 NA coding downstream 41666 13299306 ~ 13302628 (+)
AMCG00008857 LOC102783756 coding downstream 76125 13333765 ~ 13347362 (+)
AMCG00008855 NA coding downstream 97765 13355405 ~ 13366105 (+)
AMCG00008854 rhebl1,LOC105901881,LOC103035598,LOC108435697 coding downstream 110958 13368598 ~ 13377702 (+)
G51904 NA non-coding upstream 66675 13140563 ~ 13187139 (+)
G51828 NA non-coding upstream 273039 12978864 ~ 12980775 (+)
G51814 LOC106567079 non-coding upstream 325969 12927618 ~ 12927845 (+)
G51796 NA non-coding upstream 356707 12896349 ~ 12897107 (+)
G51736 NA non-coding upstream 508048 12739197 ~ 12745766 (+)
G51968 NA non-coding downstream 51976 13309616 ~ 13310773 (+)
G51969 NA non-coding downstream 53689 13311329 ~ 13312458 (+)
G51970 NA non-coding downstream 55950 13313590 ~ 13315052 (+)
G52044 NA non-coding downstream 219110 13476750 ~ 13476978 (+)
G52100 NA non-coding downstream 429199 13686839 ~ 13687780 (+)
G51928 LOC108272117,LOC107678215,LOC107581315,LOC107713111,LOC107551923 other upstream 28868 13222320 ~ 13224946 (+)
AMCG00008837 march9,LOC107664138,LOC107593952,LOC107714987,LOC106583285 other upstream 261089 12980804 ~ 12992725 (+)
G51812 NA other upstream 327020 12925238 ~ 12926794 (+)
G51756 NA other upstream 407581 12842715 ~ 12846233 (+)
G51734 NA other upstream 537028 12715494 ~ 12716786 (+)
AMCG00008856 rps26,RPS26,LOC106567051 other downstream 48855 13306495 ~ 13309430 (+)
G52349 NA other downstream 1224281 14481921 ~ 14483255 (+)
AMCG00008910 NA other downstream 1270178 14527818 ~ 14542248 (+)
AMCG00008917 smarcc2 other downstream 1480809 14738449 ~ 14754644 (+)
AMCG00008920 NA other downstream 1525403 14783043 ~ 14795184 (+)

Expression


Co-expression Network