G51946


Basic Information

Item Value
gene id G51946
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13169430 ~ 13213278 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU64997
NNNNNNNTGAGGCAGAGGTCCAAGTAAAGGCCAGCTCCTCTACTGCAGCCGTGATGACCCCTCCCCTTCACCGCCACCCTGCAGAGCCAGAGGGCGGTGCCATCGGACGATCTCCAACACCATTTTCATTTGTGCCTGGTAAGGCCATGGGAGGAAGAGACTTCCCAAGATGCCAGCAACAGACTCCTGACTCGGGCCCGAGGGATTCTGTGGCAGGTCTTGGGAAAGCCTGTTCTTTGTGGGGATACTCTGGACTCTTGATCCCAGCCCTGTGTATGGCCACTtctcacaaataaaatgttgtctttCGGTGTTAAAACAAaaaaaacaaaaaaa

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009987 cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU64997 True 336 lncRNA 0.51 2 13169430 13213278

Neighbor

gene id symbol gene type direction distance location
AMCG00008846 NA coding downstream 11127 13155497 ~ 13158303 (-)
AMCG00008839 NA coding downstream 122843 13030570 ~ 13046587 (-)
AMCG00008834 cdk4,LOC107747701,LOC107567936,LOC106565448,LOC107701179 coding downstream 199893 12966348 ~ 12969537 (-)
AMCG00008833 NA coding downstream 227194 12926593 ~ 12942236 (-)
AMCG00008832 zbtb39,LOC102796472,LOC106567078 coding downstream 251634 12913536 ~ 12917796 (-)
AMCG00008852 LOC107737517,LOC107593906,LOC107716155,LOC107668344,LOC107581315,LOC108425565 coding upstream 6646 13219924 ~ 13224794 (-)
AMCG00008851 NA coding upstream 14343 13227621 ~ 13246570 (-)
AMCG00008849 NA coding upstream 55256 13268534 ~ 13273981 (-)
AMCG00008861 NA coding upstream 89434 13302712 ~ 13305069 (-)
AMCG00008859 NA coding upstream 115691 13328969 ~ 13331002 (-)
G51875 NA non-coding downstream 146326 13022024 ~ 13023104 (-)
G51851 NA non-coding downstream 244774 12923204 ~ 12924656 (-)
G51811 NA non-coding downstream 248639 12920545 ~ 12920791 (-)
G51809 NA non-coding downstream 261097 12907321 ~ 12908333 (-)
G51724 NA non-coding downstream 509313 12657226 ~ 12660117 (-)
G51947 NA non-coding upstream 994 13214272 ~ 13215995 (-)
G51948 NA non-coding upstream 40575 13253853 ~ 13257619 (-)
G51965 NA non-coding upstream 86060 13299338 ~ 13300283 (-)
G52019 NA non-coding upstream 160105 13373383 ~ 13455852 (-)
G52041 NA non-coding upstream 224810 13438088 ~ 13439626 (-)
AMCG00008845 NA other downstream 71496 13090537 ~ 13097934 (-)
G51867 NA other downstream 167542 13000826 ~ 13001888 (-)
G51799 NA other downstream 272296 12895335 ~ 12897134 (-)
G51797 NA other downstream 277833 12890811 ~ 12891597 (-)
AMCG00008815 NA other downstream 564170 12601291 ~ 12605260 (-)
AMCG00008853 ARF3,arf3,arf3a,LOC106921537,LOC102781726,LOC106954774,LOC104956878 other upstream 44420 13257698 ~ 13261822 (-)
G51974 rps26 other upstream 94144 13307422 ~ 13309425 (-)
AMCG00008860 NA other upstream 103589 13316867 ~ 13325227 (-)
G52099 NA other upstream 472057 13685335 ~ 13686737 (-)
G52187 ptges3a,ptges3,LOC107745455,LOC107570321,LOC108433158 other upstream 725173 13938451 ~ 13983893 (-)

Expression


Co-expression Network