G51965


Basic Information

Item Value
gene id G51965
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13299338 ~ 13300283 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU65023
CGAAAACACGCTTACAACAAAAGTCGCAGCATGTCTGTCCTGTACAGCGGTGCAGAATACGGACAGGCTGACCAGTggacagaggacagagagacGGACACAGGCACACTTACCACTGTCTCCACTACTAACTCCTCCAGTACTTCGTCCCCCACTGTATTGTCCGGGGTAACAGTGTAAAAAGTTGCAAAAAGGACTAAGATCAATCCAGCCCGGAACTCCATGGTTTCAAAAACGACAGGTTTCCAACTAATAATCTAtagttttatatgtatatgaatgtatagttttatatttaaaaaaaaagtctaaaaaaaaactctgcacAGTCAGAGACTGCACGCACGAGTGTTTGAGCTGATGTGTTATTCCCGGGTTACTGTGATAACGGGCCAgtgagaaggaaaagaaaaaaagggaaagaatcTGTCCCCAACacctggactggactggattcCCCGCCTCCACATTCCGCCAGCATCTCACAAGCCCCTCCCGGTCTGGCCACGCTGGGAGCCGGGCTGCAGTTCACCGTC

Function

GO: NA

KEGG:

id description
ko04950 Maturity onset diabetes of the young

RNA

RNA id representative length rna type GC content exon number start site end site
TU65023 True 536 lncRNA 0.48 2 13299338 13300283

Neighbor

gene id symbol gene type direction distance location
AMCG00008849 NA coding downstream 25357 13268534 ~ 13273981 (-)
AMCG00008851 NA coding downstream 52768 13227621 ~ 13246570 (-)
AMCG00008852 LOC107737517,LOC107593906,LOC107716155,LOC107668344,LOC107581315,LOC108425565 coding downstream 74544 13219924 ~ 13224794 (-)
AMCG00008848 zc3h10,LOC108412311 coding downstream 90791 13206889 ~ 13208547 (-)
AMCG00008850 NA coding downstream 96074 13185439 ~ 13203264 (-)
AMCG00008861 NA coding upstream 2429 13302712 ~ 13305069 (-)
AMCG00008859 NA coding upstream 28686 13328969 ~ 13331002 (-)
AMCG00008864 acvr1ba,LOC108275853,LOC107716207,LOC107695803,LOC107708859,LOC107563637,LOC107570552 coding upstream 139639 13439922 ~ 13456129 (-)
AMCG00008865 NA coding upstream 159278 13459561 ~ 13473216 (-)
AMCG00008866 NA coding upstream 180695 13480978 ~ 13487619 (-)
G51948 NA non-coding downstream 41719 13253853 ~ 13257619 (-)
G51947 NA non-coding downstream 83343 13214272 ~ 13215995 (-)
G51946 NA non-coding downstream 86060 13169430 ~ 13213278 (-)
G51950 NA non-coding downstream 88139 13209551 ~ 13211199 (-)
G51875 NA non-coding downstream 276234 13022024 ~ 13023104 (-)
G52019 NA non-coding upstream 73100 13373383 ~ 13455852 (-)
G52041 NA non-coding upstream 137805 13438088 ~ 13439626 (-)
G52131 NA non-coding upstream 471277 13771560 ~ 13776929 (-)
G52157 NA non-coding upstream 522830 13823113 ~ 13830315 (-)
G52214 NA non-coding upstream 705444 14005727 ~ 14006439 (-)
AMCG00008853 ARF3,arf3,arf3a,LOC106921537,LOC102781726,LOC106954774,LOC104956878 other downstream 37516 13257698 ~ 13261822 (-)
AMCG00008844 NA other downstream 114982 13135732 ~ 13184356 (-)
AMCG00008845 NA other downstream 201404 13090537 ~ 13097934 (-)
G51867 NA other downstream 297450 13000826 ~ 13001888 (-)
G51799 NA other downstream 402204 12895335 ~ 12897134 (-)
G51974 rps26 other upstream 7139 13307422 ~ 13309425 (-)
AMCG00008860 NA other upstream 16584 13316867 ~ 13325227 (-)
G52099 NA other upstream 385052 13685335 ~ 13686737 (-)
G52187 ptges3a,ptges3,LOC107745455,LOC107570321,LOC108433158 other upstream 638168 13938451 ~ 13983893 (-)
AMCG00008918 c1ql4b,LOC107673443,LOC107711019,LOC108440793,LOC107585204,LOC108271740,LOC107667333,LOC108432462,LOC100702077,LOC103376602 other upstream 1393547 14693830 ~ 14715322 (-)

Expression


Co-expression Network