G51969



Basic Information


Item Value
gene id G51969
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13311329 ~ 13312458 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>TU65029
taatggacTTTCCGCCAATACAGTACAAAACTTACAGTAGTTATCTCCATTACACAAATATATCtaattacagtataatacatatacaaaggCTCTGCAGTAGTTTCTTTAAactttgtagtttttttttcttttttcttttattatttaaagcgATCCATACCATTCACAGgaagaaattaacaaaaagatGGGGAAAAAGgttgataatattaatattactaataataatattaagggAACACAAAGACACTTAGCAATCCGTAAAGAGAAATATTACGAATCGTGGTGGGAGGAGAAGcaaacaaagtttaaaaaaaaaaaaaaaaaaagtatccaaAAGGGGGGGTGACAAGGGGGTACAAGAAGAGAAAGACATATTGCACTTTGGAATTTGTATACAttagtaacaaaataaaattgaggAGAATTATCTTCTGTACAGGGCGATCAGAAAGGGAGTAGGAAAGAGTTCAGACCTCATTTAAGCCTCGGCCGTGTGAAGAGCCACTTGCAAAAACAAAccctaaataaaataaacacaaaactgaagcaCAGAATACACTCAGCCAGTGCTGGTACCATAGACATGCACCCTGCACCTTCACCCCCCCTTCAATTCTTCGAAACAGTGGGCCCGACTCAAACcataatacaacaaaatcacCTCACCACCACCACACGGGATGtcataaaataacaatgataaaaACGGTCCGGGGCTCTCAGCTACACCCCCAGACTGATCTGGAGAACCACTGGAGGGATTCTCCACTCTGCAtaactttgtttttcagtaagTATCGAAGTTAATTGCAATATACTTCGGTCCAATGGGGTGTGAGTGGCATTTTCTTGTGTGTAACCCCCCTCACAAAACATCAAATATCATTATGAGACAACTACTTCCTCTGGTGGGCAAAACTGGGTCAATCAGGACAGTGTGGCGCCCTCCTCTTCTTCATGAAACCCAGTACAGACACTGTTGTCCCGGGCAGTGCTGTCTCCCCACGCATATGGACATTTTTTGTGGtctatttttttggtttgcgAGACTTGAGGTGAGCCCGTGTGTGTGGTAACAGGCATAACTGTCAATGAGAAGCCCTTACCCTCCCCCTACAgacaca

Function


NR:

description
PREDICTED: insulin-like growth factor 1 receptor

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU65029 True 1130 lncRNA 0.40 1 13311329 13312458

Neighbor


gene id symbol gene type direction distance location
AMCG00008858 NA coding upstream 8701 13299306 ~ 13302628 (+)
AMCG00008847 wnt1,LOC106567052,LOC106572674 coding upstream 22404 13281274 ~ 13288925 (+)
AMCG00008842 NA coding upstream 178654 13123231 ~ 13132675 (+)
AMCG00008841 ctdsp2,LOC106583267,LOC106572594,LOC105013607 coding upstream 194285 13105526 ~ 13117044 (+)
AMCG00008840 NA coding upstream 213414 13074080 ~ 13097915 (+)
AMCG00008857 LOC102783756 coding downstream 21307 13333765 ~ 13347362 (+)
AMCG00008855 NA coding downstream 42947 13355405 ~ 13366105 (+)
AMCG00008854 rhebl1,LOC105901881,LOC103035598,LOC108435697 coding downstream 56140 13368598 ~ 13377702 (+)
AMCG00008862 kmt2d,LOC107563643 coding downstream 74949 13387407 ~ 13431241 (+)
AMCG00008863 prkag1 coding downstream 121999 13434457 ~ 13439625 (+)
G51968 NA non-coding upstream 556 13309616 ~ 13310773 (+)
G51904 NA non-coding upstream 124190 13140563 ~ 13187139 (+)
G51828 NA non-coding upstream 330554 12978864 ~ 12980775 (+)
G51814 LOC106567079 non-coding upstream 383484 12927618 ~ 12927845 (+)
G51796 NA non-coding upstream 414222 12896349 ~ 12897107 (+)
G51970 NA non-coding downstream 1132 13313590 ~ 13315052 (+)
G52044 NA non-coding downstream 164292 13476750 ~ 13476978 (+)
G52100 NA non-coding downstream 374381 13686839 ~ 13687780 (+)
G52234 NA non-coding downstream 816029 14128487 ~ 14128691 (+)
G52361 NA non-coding downstream 1230181 14542639 ~ 14545754 (+)
AMCG00008856 rps26,RPS26,LOC106567051 other upstream 1899 13306495 ~ 13309430 (+)
G51939 NA other upstream 53689 13253814 ~ 13257640 (+)
G51928 LOC108272117,LOC107678215,LOC107581315,LOC107713111,LOC107551923 other upstream 86383 13222320 ~ 13224946 (+)
AMCG00008837 march9,LOC107664138,LOC107593952,LOC107714987,LOC106583285 other upstream 318604 12980804 ~ 12992725 (+)
G51812 NA other upstream 384535 12925238 ~ 12926794 (+)
G52349 NA other downstream 1169463 14481921 ~ 14483255 (+)
AMCG00008910 NA other downstream 1215360 14527818 ~ 14542248 (+)
AMCG00008917 smarcc2 other downstream 1425991 14738449 ~ 14754644 (+)
AMCG00008920 NA other downstream 1470585 14783043 ~ 14795184 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other downstream 1494839 14807297 ~ 14811757 (+)

Expression



Co-expression Network