G51974 (rps26)


Basic Information

Item Value
gene id G51974
gene name rps26
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13307422 ~ 13309425 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU65035
GTTGAATCAGCTCAGGCAGGGAAACGGGGGTTTTAGACAGAGCCCAGATATcagcaggagaggaggaaaCACAGTTCACAGCTCACCAGGCAACCCACACAtcaatatacacacaaaaattataataagacAGTAACTCCCAATGCAGTCTGTTCAAATGGACATTTTATTGTTGAATTTTGATGTAGAAATGTACAGGTTCATCCCGCATTACATGGGCTTCGGTGGGGCTCTGGGTGCGCCGCCCtgtataagaaaaaataaagtaaataattgaaatcCCCAATAACCCAAAAGGCAACCTCCACTCATCCACACTGTGTACAACCACTACAACCTCTAACTGCTGCCCTGCATGCGCTCTGTGTAGTTGGCGTGTAGCCCACGTTTATGTTCACATGCGCCCTGCATCtctgtgtgcaagtgtgagAATGCGTGTCTGTCCATCCGTCCGTCAGTAGATACTCACACTGGGTCTGAAGCGGGGAGGTGGGGTGCGGTCTTTCCTGGCCTCGCGGGAGCGGTTCCTCACCACCTTGCTGTGGATGGCACAGCTGACGCAGTAATGCAGCTTCACGTACAGCTTGGGCAGAACGTAAGTCAAAGACGCTGGCCTCGGAGATGTCCCTGACGGCCGCTGCCTCCACAATGTTCCTGATGACGAACTTCTTAATGGCCTTGTCCTTGGGCACACAGCGGGCACAGTTGGTGCAGCGGATAGGCTGGACATGGCCACGACCCTTCTTGGCACGGCCGTTATTCCTTCTCTTCTTCGTCTGCAGAATGAAAGTATTGagaacattacaaatacaatttactcCTGGAGGCATCAGGCTAAACCCCTTTCATCACTGGGCTGTGTAAATCAAACTCTGCCgttcattaaaatatatcgATTTAATGTAAAATTCGTAACTTGTGTGGGTTTTGAGATTAAATAAGTATACAAAGGGCATTGAATCATACCATTCCCACTTTAAAGCAAGTTCGTTTGAGTTTACCTGAAACTCTCCAGATATTTACATAAAAGGACACAACACTCGGCTAGAATTATGTACTAATAGTAGCGGGCGATGTAAATCTGTAACGTACAGTAACGGATGTATGGATTTGATATAGATCTATAAAAACTGATC
>TU65036
GTTGAATCAGCTCAGGCAGGGAAACGGGGGTTTTAGACAGAGCCCAGATATcagcaggagaggaggaaaCACAGTTCACAGCTCACCAGGCAACCCACACAtcaatatacacacaaaaattataataagacAGTAACTCCCAATGCAGTCTGTTCAAATGGACATTTTATTGTTGAATTTTGATGTAGAAATGTACAGGTTCATCCCGCATTACATGGGCTTCGGTGGGGCTCTGGGTGCGCCGCACTGGGTCTGAAGCGGGGAGGTGGGGTGCGGTCTTTCCTGGCCTCGCGGGAGCGGTTCCTCACCACCTTGCTGTGGATGGCACAGCTGACGCAGTAATGCAGCTTCACGTACAGCTTGGGCAGAACGTAAGctagaggaagagagaagataGTGTTACCCCCCAAGATCTTGTGGTCAGGCACTCGCCCTCGCTGCATCTCTAACACCtagcattttcatttccatgggagaaagacagagaagacaCTGCAATAACAACTGCCTCCCCACAATCACTCCAATCCAGCAAAATGTCGAGTACAAGTTTTTAAACCACACAAGTCACAGCAGATGGGGGACTGGAGTCctcactcaaaaaaaaaaaaaaaacagggccTTGATCTCACTCTTTCGGCAGAAGAATATAATCAGGAAATCAAGGAATCCTGCAGACTCCGAGTGCAGTCTGGTAGGAGGGAAGGCCAGGGCAAATTAAACTGGAAATCCTGCATGTTCTCAACCAGGCCAAACAAAAACCAAGGAATCACATTTGAGATGCTCCACACTCCTGTCTTCACAAAGGGCCTGAAAACAAGGGAACAAGCTTCTGCTCTCCTCCACCTGGTGCTCAGTTACACACAGCAGCCTGCAAACCCATTAAAGGATCACCATTCCGCAAGCAGAGTCTTTTCTGCTACCCACAATCCCTGTGGCACACAGTGCTGAGCACACGAACTGaggattttttgggggggaactTCAtggggaagatgaaataatttgctggtgtgacctggaaaacaGATACTGTATATCAATTTGAAAATTGACATCCTGGGGAGACCATCACCCTGCAGTGGATTGATAAAAGCtgagaatacacacacaccagtctACATTTCCATCAAGGCTTAGCACTACACGTGGGGGCGAAATGGGCTGGAGGAATGTATAGTTAACCTTCAACTTTAGGAGGGACAGAGGCCGAGACGCACAGACGTGGGGACAAACACTCACAGTCAAAGACGCTGGCCTCGGAGATGTCCCTGACGGCCGCTGCCTCCACAATGTTCCTGATGACGAACTTCTTAATGGCCTTGTCCTTGGGCACACAGCGGGCACAGTTGGTGCAGCGGATAGGCTGGACATGGCCACGACCCTTCTTGGCACGGCCGTTATTCCTTCTCTTCTTCGTCTGCAGAATGAAAGTATTGagaacattacaaatacaatttactcCTGGAGGCATCAGGCTAAACCCCTTTCATCACTGGGCTGTGTAAATCAAACTCTGCCgttcattaaaatatatcgATTTAATGTAAAATTCGTAACTTGTGTGGGTTTTGAGATTAAATAAGTATACAAAGGGCATTGAATCATACCATTCCCACTTTAAAGCAAGTTCGTTTGAGTTTACCTGAAACTCTCCAGATATTTACATAAAAGGACACAACACTCGGCTAGAATTATGTACTAATAGTAGCGGGCGATGTAAATCTGTAACGTACAGTAACGGATGTATGGATTTGATATAGATCTATAAAAACTGATC

Function

symbol description
rps26 Predicted to enable mRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 10. Orthologous to human RPS26 (ribosomal protein S26).

NR:

description
PREDICTED: 40S ribosomal protein S26

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65035 False 1136 lncRNA 0.46 2 13307422 13309425
TU65036 True 1780 TUCP 0.47 2 13307422 13309425

Neighbor

gene id symbol gene type direction distance location
AMCG00008861 NA coding downstream 2353 13302712 ~ 13305069 (-)
AMCG00008849 NA coding downstream 33441 13268534 ~ 13273981 (-)
AMCG00008851 NA coding downstream 60852 13227621 ~ 13246570 (-)
AMCG00008852 LOC107737517,LOC107593906,LOC107716155,LOC107668344,LOC107581315,LOC108425565 coding downstream 82628 13219924 ~ 13224794 (-)
AMCG00008848 zc3h10,LOC108412311 coding downstream 98875 13206889 ~ 13208547 (-)
AMCG00008859 NA coding upstream 19544 13328969 ~ 13331002 (-)
AMCG00008864 acvr1ba,LOC108275853,LOC107716207,LOC107695803,LOC107708859,LOC107563637,LOC107570552 coding upstream 130497 13439922 ~ 13456129 (-)
AMCG00008865 NA coding upstream 150136 13459561 ~ 13473216 (-)
AMCG00008866 NA coding upstream 171553 13480978 ~ 13487619 (-)
AMCG00008869 NA coding upstream 228568 13537993 ~ 13540286 (-)
G51965 NA non-coding downstream 7139 13299338 ~ 13300283 (-)
G51948 NA non-coding downstream 49803 13253853 ~ 13257619 (-)
G51947 NA non-coding downstream 91427 13214272 ~ 13215995 (-)
G51946 NA non-coding downstream 94144 13169430 ~ 13213278 (-)
G51950 NA non-coding downstream 96223 13209551 ~ 13211199 (-)
G52019 NA non-coding upstream 63958 13373383 ~ 13455852 (-)
G52041 NA non-coding upstream 128663 13438088 ~ 13439626 (-)
G52131 NA non-coding upstream 462135 13771560 ~ 13776929 (-)
G52157 NA non-coding upstream 513688 13823113 ~ 13830315 (-)
G52214 NA non-coding upstream 696302 14005727 ~ 14006439 (-)
AMCG00008853 ARF3,arf3,arf3a,LOC106921537,LOC102781726,LOC106954774,LOC104956878 other downstream 45600 13257698 ~ 13261822 (-)
AMCG00008844 NA other downstream 123066 13135732 ~ 13184356 (-)
AMCG00008845 NA other downstream 209488 13090537 ~ 13097934 (-)
G51867 NA other downstream 305534 13000826 ~ 13001888 (-)
G51799 NA other downstream 410288 12895335 ~ 12897134 (-)
AMCG00008860 NA other upstream 7442 13316867 ~ 13325227 (-)
G52099 NA other upstream 375910 13685335 ~ 13686737 (-)
G52187 ptges3a,ptges3,LOC107745455,LOC107570321,LOC108433158 other upstream 629026 13938451 ~ 13983893 (-)
AMCG00008918 c1ql4b,LOC107673443,LOC107711019,LOC108440793,LOC107585204,LOC108271740,LOC107667333,LOC108432462,LOC100702077,LOC103376602 other upstream 1384405 14693830 ~ 14715322 (-)
AMCG00008923 NA other upstream 1531282 14840707 ~ 14865988 (-)

Expression


Co-expression Network