G52019


Basic Information

Item Value
gene id G52019
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13373383 ~ 13455852 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU65103
tggtgtgtgtgtgtNNNNatatatatatatatatatatatataaataaatcttatgtttcaagattacaaaaaaattcACCTGTAGTCTCCACACATTACTGCAAACCCAGGAAGCACAAAGAAAAGCAGACCAATACAAAGGactaactaatttatttatatacaaaaactGTTTACAGCAAGTCTCTGTTCTGAGTGCGACTGCaagagaggtgtgtgtgagtgtatgcctgtgtgtgtgagtcagtgtctgtatgagtgagtgtctgtctgtctgtctgtgtgactgtgagaGTGGCAAGTTTGCCAGGAGAGAGGAGTCAGGGCTGCACTGACAAAACACTAAGCTGGTGCCCTGAAGCAGACAGCAATTCTGAGAAAAACCAACAAACTGCAGcaacaccaccaaaaaaaaaaagagaaacaaaaaaataatcacacacgCTACCCTACAGGGGCTCCCCAGTCAGCGCCCAGAGAGAACGATGCCACACTGGGCGGCAGGGTGAACAGGTCCAGCCCTTTGGGGGGGTACACCTGTGTCCTCAGGACCTCGCTCCAAGATCGCTCCCCAGGTGCTTcatctatttaaaatgacattccTAGCCCTTAGAAAGTTGTTTCAACAGCAAATTTACCCATGATGCATTCCAGACAAAGATCTGGAGACACAGACTGGAGTCCCTACACTCAAGGGTGGGCATGCTCCAGGGTTCGGAGGGGGAGCGGGAGCAAGGAAAGCAGCCAGGGACCCAGGCCTGGGGAGCCCTTTCCCATTGATCGACAGTTGCTCTCCCAACCACCCCCCTGTGACAATACACACTCAGTCGCAGGGAGGGTGACCGCTCCACCTGGCACTTGCTTATATAGAGGTCTTTAAACTCACACACTACTTAGGGCAGCCAAGGGCTCCCAgattggaataataataataataataataataatattattattaataataacaataataatgtcattCAACAATCCCCTTTTACTCAGAACACCATACTGAGCCTAGAGGTGGAGCTGGGCTATTATCACCAGCTGAACTATACTGTCCTATACCGCCACTGCCTGCAGAGTCAAGAGACCTGCACTTCCTGTTTGAATTACAGAGCACAGGATGGTTCAGGACACTCACTCAAACGACCggggggacacacacacccggaaCCTCCTGCTACCAAACCCCTCTGCTGAACCACTGTACACTGGGCTGAGCTACATCACCAGGGGGCACTGTCCATCAAGTCTAAGTGGTTTCATCTGGGAGGTGGGGGTGATAACTTTAGCATGTCAGTTCATGTGTTATGAATATGCAATCTGACAGAGAGTGAGAAAGGAGGATAGGGAGTAAGGCACAGGGCACAGTAAACTGTGGCCAAAACATAAATaccagagaaaaaaataaactgagaatAATAATGGACTTGTCAACATCTTCACATCCAAACCAAAGAAAAGAACCTGTGATTCTGAATTCTGATTAGTGTTCATgatgtttgtattgatttacaaCCATCTATgaagacagaaaagaaagacaaacacagagaaacagagagaagggGATGACAAGGTTTACTTTtcccaaaaatatattaaccgCTTAGTCTGCAACCATAAACCGCCATGACCGAGTACTCGGTTTAGGAGCAGTGTAATTACTTAATATACACATACCCGACCCTAACAGAACAGAGTGATCCAACACTCCACCTCCCCTTGCGTCCGCCACCAGGGAGCCATTCGCTCAGGGAGCCAAACGATTGCccttctttttgtttatttgtaggTCTGTTTCAAAGTAAAGCAGTTTCTAGTAAcgcatcacaatatatattaatattacaaaggAAAACACCCCAGTCTTGCCCATGAAGGAAATCAGTCAGCTGGTCCTGAAACACACTGGGAGACTATATATTGTGAGCCTTTTCTTCACAGGGGGATTGCAGGGGACACTACTCAGAGCTGCACTCTCAACACTGCAGTCAATAGAAGTATAGAATCCCCCCACCTTACAGGGATTCTACCTACTCTCTTTCACCAGTGTGGtagtggtggggggtgggggttgatAGTGAGGCCTATTTGGGGTTTCttcatacattatatttattctgaagTGTAAAAATTCTCTGAAAGCTCCAGAGAGGAGAATTGAGTTTAATGTTTGATGCATGAAAGCTTGACACATCCAGCCTGTTGAAACCCAGAGGAGGGTTTGTTTCAGGTTCTTGATTTGTTGTGGTTTACTTACTGTCCCTGGCCGGCAGCATCCTGCACTGTCTACTTCCCTATAGAATAAACTTATTTTCTGGGCAGATGACAACGGTCTGCTGTATAGTGGAACTGTCTACACCCCCAACACAGGCAACTCGTTCACCATCtctatgtacacacacactagcatgcacacatgcacacaatttCCAGTGCTCACTGGAATAAAACTTCTTCTGTGTAGTTAGATGCAGTTGCCACAGGGTAGGGGTATCAGGAGTTTGGCAAACTATATTCCCAGATTACAACAGTTAACCCTGAGACGACAATCCCCCGAGGTCGAGGTGAATACCCAAACCTGCACTTCCGAGTGCAGAGAATCACCCCCCCCACTTCAGAACGGAGAGGAATGCCGTTAATCTAAGGCACAGGACGGTCGACAAGAAAATGTCTCCCGTTTGGAATTAAGTACAACAACCGATGGAAAGAAAgacaggagaaagaaaaggagctCAGCAGAGGAACAGCGACACTGTTTCTCTAGATCAGCAGAGACTGACAGCCAGGGTGTCAGGACAAGGCACCGGTTTTAAaggctttgtttttgtgagtgtgttggTGTGCccaagtgagtgtgtgtgtgtgtgtttgtttgtgacaATAGCAGAAACCCCACTTTACCCACAAATTCTATTTATCTTCCTGAAGGAGTAAAAATTGAAGTgaagaggagaaagaagagACAGAGATGCCTATACAACTATCAAAAgtataattacttaaaataataataatcatcattatcaacCTCATCCAGCCAGCTTACTACCAAAAAAAGGTTACGGtccactattttttttttttttttttttttataggaaaTTATATAACCATCTAtaattttctataaaaaaaggGACAAATTATTACAGtaacaaaataatggaaaatatactGCCAGTGAGTTCCTTGCTGTATTTTACAGTGTATACACttcctttataaaaaaataagcattgtATCTGCGACTGAGGCTGAGATTTTTCATCCAATCACTTCACAGGTGCAGACAGCCTCAACCGAGCCGTTCCTACTGTGTACAGTGACTGCCCGGGACCATAGCACAGCATTTGACAGCCAGCCCCCGGTATCCCACAGCTGACACCAACAGCCAATGCACAATAACTGGAAAAGCCGCCAATGAAGCCGGATCGGATGGGAGTTCAGGCAGCAGTCAGGTGAGGCCTCCAATTCTTCCCCTTCTCCCACTGCACGCTGTCTTCCATCCATTACAGCAAAACTGTGTCTCCTCGTATTTTCAACAAAGGCTCAAGCCGTCAGGCAAGCTTCAGCCAGGCCTAGTGGATCAGGATAGATAAAGGGGTGCGTGGCGGGTGGGCGGGCTTGTACGGGTGGTAAGAGTGCTTGGATTGGTGGAGTTCAATTGCAGTGAAGGTCCTTAATTGGCTGGGTGCAGGTTGGGATCCGATTGGCAGAGATCAGCAGTGGCTGCTGTAACTGTGTGACTCCGGTCTGACCTGTGGTGGGTTGCgggtggtggaggggggtgTGGAGAGGTCTGGATTAGGACTGGTCTGAATCCTTCCTTTTCCCCACAGAAATCAAGAACACAGGGGCCACTCTGGGTAAATCTGACTTATACTCAATACGTTTAGAACaaatgtaaaggaaataaaatattctgattTTTTAGTCTGAATTTAGAAGAAGCAgaacctgttttgttttggtaacacctcagtgttttgtttgggttttttatGTTATGGTGGTTTGGTTCGTTAACCATCCTTATTCTCTGGATTTCCATCATTCTAAACCTGGGACCTCCAATCTTCAATTCTAAAGTGGATGGGTGGCtgggggcagggagggggtgggtCCAGAACCATGACAGGCTGATTAACGGAGCCCTGCTGTAACACTCCAGAGCCAGGTCTGTGCTGTCCGGGCCTGTGGGCCCCGCATGCTGTGATTGCTCAACTAGTCGTGGCATCTGTGTGCtggtgaaggaggaggaggaggtggtggtggtggtggtggtggtggtggtggtggtgggggttggCCTGGCTGTGCCGCTCTGGCCCCTGCGTCCCAGGTGGCGTCTCTACATCACTCTGCACTTCTTGTCCTCTGCAGGTGCGTTGCCGTCCGCCCTCTCCATCTCCAGGATGATCTTCTTGAATACCTCCACGGCCGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65103 True 4455 lncRNA 0.46 2 13373383 13455852

Neighbor

gene id symbol gene type direction distance location
AMCG00008859 NA coding downstream 42381 13328969 ~ 13331002 (-)
AMCG00008861 NA coding downstream 68314 13302712 ~ 13305069 (-)
AMCG00008849 NA coding downstream 99402 13268534 ~ 13273981 (-)
AMCG00008851 NA coding downstream 126813 13227621 ~ 13246570 (-)
AMCG00008852 LOC107737517,LOC107593906,LOC107716155,LOC107668344,LOC107581315,LOC108425565 coding downstream 148589 13219924 ~ 13224794 (-)
AMCG00008865 NA coding upstream 3709 13459561 ~ 13473216 (-)
AMCG00008866 NA coding upstream 25126 13480978 ~ 13487619 (-)
AMCG00008869 NA coding upstream 82141 13537993 ~ 13540286 (-)
AMCG00008874 NA coding upstream 124564 13580416 ~ 13584831 (-)
AMCG00008873 NA coding upstream 129235 13585087 ~ 13608948 (-)
G51965 NA non-coding downstream 73100 13299338 ~ 13300283 (-)
G51948 NA non-coding downstream 115764 13253853 ~ 13257619 (-)
G51947 NA non-coding downstream 157388 13214272 ~ 13215995 (-)
G51946 NA non-coding downstream 160105 13169430 ~ 13213278 (-)
G51950 NA non-coding downstream 162184 13209551 ~ 13211199 (-)
G52131 NA non-coding upstream 315708 13771560 ~ 13776929 (-)
G52157 NA non-coding upstream 367261 13823113 ~ 13830315 (-)
G52214 NA non-coding upstream 549875 14005727 ~ 14006439 (-)
G52233 LOC101154678 non-coding upstream 671387 14127239 ~ 14127501 (-)
G52296 NA non-coding upstream 816122 14271974 ~ 14275087 (-)
AMCG00008860 NA other downstream 48156 13316867 ~ 13325227 (-)
G51974 rps26 other downstream 63958 13307422 ~ 13309425 (-)
AMCG00008853 ARF3,arf3,arf3a,LOC106921537,LOC102781726,LOC106954774,LOC104956878 other downstream 111561 13257698 ~ 13261822 (-)
AMCG00008844 NA other downstream 189027 13135732 ~ 13184356 (-)
AMCG00008845 NA other downstream 275449 13090537 ~ 13097934 (-)
G52099 NA other upstream 229483 13685335 ~ 13686737 (-)
G52187 ptges3a,ptges3,LOC107745455,LOC107570321,LOC108433158 other upstream 482599 13938451 ~ 13983893 (-)
AMCG00008918 c1ql4b,LOC107673443,LOC107711019,LOC108440793,LOC107585204,LOC108271740,LOC107667333,LOC108432462,LOC100702077,LOC103376602 other upstream 1237978 14693830 ~ 14715322 (-)
AMCG00008923 NA other upstream 1384855 14840707 ~ 14865988 (-)
AMCG00008934 NA other upstream 1576495 15032347 ~ 15057206 (-)

Expression


Co-expression Network