G52041


Basic Information

Item Value
gene id G52041
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13438088 ~ 13439626 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU65126
ctaaaataaatacagtttattgCTCATGCTCAAGATAAAAATGACATGTACAGCATGaatagaaaagaaacaaaactgtatataatatatacctGTATGTCTTCAAAAATCAAGtctaattaaagtaaaacagcATTTATAATTGATAACTGTGTGAAGTGACCACATCACTTCCCTGCTTTGAGGCAGCTTCacatatcaaattaaaacaaaatacccaCCCACTCGTCTCGGTCTGCAGGGTCATAGTTTAGGTCTCAGTGAAGCACCCTGCACTGGACATTAACCCAGGGTGAGTGGGCAGCCAGGCCCTCACGAGACCAGCCCCACACAAGgactttatttttgattattttaattcatattatgCCGTAATAAGGAAGTGCAGTATGGCTGAAAGATGTACAGAAACAAGGACAGCGGGAAAGAGAAGCAGATGCTCCAAATTGGCTGCTGGGCCCAAAGAGGAGCTGAGAGCAGCTGGGAGGTATTGGGCCAAAATATTAAGAtcccttttcttgttttttcttgtttgcttgcATTTGTCTGTCCCcaacatgaacacacacacacaaactggcACGCAGAGACgtacaaaagacacacacacaccaaccagGCTCATAAAGACCTGATATAGAACTTAAATTAGGATAAAGTGGTAGTAAAAATAATGATCTAAGAGTAAGGAATGGAGTAGGACAAGAGAACTAAtgagatattatatataatatataaatttataATTATCTTGGTAAGTAAATCTGGGTGCAACTTTACCTCTTTCAAGACTATTGCTACAATCTGTGAAAAACATCTTAAGTATCTATGTTCATATAGGTCCATAAGGCCAGACACAGAGGGCAGTGTCGGTTTGTGCCCAGCGGGATGTGCTGCCGGTTCAGCTGTCTGAAGTGCACAGAGTCCAGGTCCTAGGCCCCCTGACCGAGCAGACAGGATAGCACAAATGAAGAGTGAAAGCGAAAGAGGGAATCACATGATTACCCCCCCAAACAATCAATCCAAATGAAATGCTGAATTGATTTGGTCTGGACCGGACCGGCTCAGCTCTGAATGTCACAGTCCTTGAGGGTGGTATTTGCAGCCCACAGAGTGGTGGGTTTCCACCTtccccgggggggggggggttgagatAGGGAGTGttgggggggctgtgtgtgtgttgggagggCAGGGACAAAGTGAAGGGGGACTTTGACGAATGCCTGTCTAACCTCTACCCCTCCTGCTATTGTCATTCCTGGCACCCCGGtctcccactccctccctcctgtgTCCCTCCGCCATCAGTCATCTTTTGTCcctgcagggagagggagagagagagaggtcactTTTGAGGTAACAAATCATATCTGCATTTAAACTTGTTTCCTATGAATTAGTATAAGGTTCTGGTCTGTGTGCCTTTGTTATTGACTGATTCTGCACTCACCTCCCACTGTGAGCACCAGCGCCTGCAGGATGTCAGACAGAGACACTATGCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65126 True 1509 lncRNA 0.45 2 13438088 13439626

Neighbor

gene id symbol gene type direction distance location
AMCG00008859 NA coding downstream 107086 13328969 ~ 13331002 (-)
AMCG00008861 NA coding downstream 133019 13302712 ~ 13305069 (-)
AMCG00008849 NA coding downstream 164107 13268534 ~ 13273981 (-)
AMCG00008851 NA coding downstream 191518 13227621 ~ 13246570 (-)
AMCG00008852 LOC107737517,LOC107593906,LOC107716155,LOC107668344,LOC107581315,LOC108425565 coding downstream 213294 13219924 ~ 13224794 (-)
AMCG00008864 acvr1ba,LOC108275853,LOC107716207,LOC107695803,LOC107708859,LOC107563637,LOC107570552 coding upstream 296 13439922 ~ 13456129 (-)
AMCG00008865 NA coding upstream 19935 13459561 ~ 13473216 (-)
AMCG00008866 NA coding upstream 41352 13480978 ~ 13487619 (-)
AMCG00008869 NA coding upstream 98367 13537993 ~ 13540286 (-)
AMCG00008874 NA coding upstream 140790 13580416 ~ 13584831 (-)
G51965 NA non-coding downstream 137805 13299338 ~ 13300283 (-)
G51948 NA non-coding downstream 180469 13253853 ~ 13257619 (-)
G51947 NA non-coding downstream 222093 13214272 ~ 13215995 (-)
G51946 NA non-coding downstream 224810 13169430 ~ 13213278 (-)
G52131 NA non-coding upstream 331934 13771560 ~ 13776929 (-)
G52157 NA non-coding upstream 383487 13823113 ~ 13830315 (-)
G52214 NA non-coding upstream 566101 14005727 ~ 14006439 (-)
G52233 LOC101154678 non-coding upstream 687613 14127239 ~ 14127501 (-)
G52296 NA non-coding upstream 832348 14271974 ~ 14275087 (-)
AMCG00008860 NA other downstream 112861 13316867 ~ 13325227 (-)
G51974 rps26 other downstream 128663 13307422 ~ 13309425 (-)
AMCG00008853 ARF3,arf3,arf3a,LOC106921537,LOC102781726,LOC106954774,LOC104956878 other downstream 176266 13257698 ~ 13261822 (-)
AMCG00008844 NA other downstream 253732 13135732 ~ 13184356 (-)
AMCG00008845 NA other downstream 340154 13090537 ~ 13097934 (-)
G52099 NA other upstream 245709 13685335 ~ 13686737 (-)
G52187 ptges3a,ptges3,LOC107745455,LOC107570321,LOC108433158 other upstream 498825 13938451 ~ 13983893 (-)
AMCG00008918 c1ql4b,LOC107673443,LOC107711019,LOC108440793,LOC107585204,LOC108271740,LOC107667333,LOC108432462,LOC100702077,LOC103376602 other upstream 1254204 14693830 ~ 14715322 (-)
AMCG00008923 NA other upstream 1401081 14840707 ~ 14865988 (-)
AMCG00008934 NA other upstream 1592721 15032347 ~ 15057206 (-)

Expression


Co-expression Network