G52100


Basic Information

Item Value
gene id G52100
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13686839 ~ 13687780 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU65199
atatattaatgttttggaTTAGTTGGTTTTCTCTTAGGAATCCTTGCATCCACACACATCCAGGCACTACAGTGTGAAGCTAGAGCACATTTTGTTTACTGTGCAACATGTTAGGAAAACCTAGAGGCAAATAAACTAGAGGCGATTAAAAATCATACCAactatttttcttaaaataatatttaacaatatctAGAATTTAAATTACCTGAAGCTATTTTGTCTGCTTTAATTATCAGTTaatatcagtaataataataatagtagtagaaATAGAAGTAGTAGGCCCTAGTAGTAGAAGAATTAAGTTAGGAGCCTTGTGCATCAGTAACAGTAGGTAAATGTAAGGatagtagctgtagtataaaAGCAGGTAGCTTTAACAGCTTTAAGCTTACATAACTACTACACCACCTGTATCATAAGCTTTAgcatatattgttattattatgtttattatttgtagtagttgtagtaatagaaatagtaaataataacagtaacgtGAAAATATTATGCATACGGATACAGGGAGTGGACAGAGGTGTGTGGCCTGTGAGTCTAACaaatcagatcaaatcaaaagtGCCCTGTCTGGATGTCAGATTAATTATCTTTGTATTACCTGTGTTTGTAAATTATGTGCAATGTGCAGCTCTGTGTACTGCCCTGGGTAGGCCAAGTTCAGTACAGTGTCTATGTAGTTgattgtttgaaaaaaaaaacaaaaaaaaaacatccaagtCCATatagagaacagaagacaaagcaGGAGtatgtgataaagtttggggttACTCATTGACATCATGTTGTTACTTAGCAACCAAGTGAGTAATCCCCTATATGATAATGTTATTTGTTACACTTTAGAGGAGCCTTCCCGAGTCGTCCCCGGAGCACTTTGTTATAAGTTGAATAAACTACTTTGGTATGATTCTA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades

RNA

RNA id representative length rna type GC content exon number start site end site
TU65199 True 942 lncRNA 0.34 1 13686839 13687780

Neighbor

gene id symbol gene type direction distance location
AMCG00008875 NA coding upstream 934 13684568 ~ 13685905 (+)
AMCG00008870 NA coding upstream 48593 13629173 ~ 13638246 (+)
AMCG00008871 NA coding upstream 58362 13617051 ~ 13628477 (+)
AMCG00008868 LOC106567041,LOC103368469,LOC105013543,LOC100705688 coding upstream 104835 13572526 ~ 13582004 (+)
AMCG00008867 NA coding upstream 152238 13517663 ~ 13534601 (+)
AMCG00008877 NA coding downstream 987 13688767 ~ 13720249 (+)
AMCG00008876 NA coding downstream 47194 13734974 ~ 13738084 (+)
AMCG00008880 cacnb3a,LOC107724200,LOC107696997 coding downstream 127645 13815425 ~ 13823056 (+)
AMCG00008885 NA coding downstream 211511 13899291 ~ 13904755 (+)
AMCG00008886 LOC107737655 coding downstream 218522 13906302 ~ 13921627 (+)
G52044 NA non-coding upstream 209861 13476750 ~ 13476978 (+)
G51970 NA non-coding upstream 371787 13313590 ~ 13315052 (+)
G51969 NA non-coding upstream 374381 13311329 ~ 13312458 (+)
G51968 NA non-coding upstream 376066 13309616 ~ 13310773 (+)
G51904 NA non-coding upstream 499700 13140563 ~ 13187139 (+)
G52234 NA non-coding downstream 440707 14128487 ~ 14128691 (+)
G52361 NA non-coding downstream 854859 14542639 ~ 14545754 (+)
G52364 NA non-coding downstream 865116 14552896 ~ 14553241 (+)
G52372 NA non-coding downstream 872939 14560719 ~ 14561249 (+)
G52374 NA non-coding downstream 874665 14562445 ~ 14562710 (+)
AMCG00008856 rps26,RPS26,LOC106567051 other upstream 377409 13306495 ~ 13309430 (+)
G51939 NA other upstream 429199 13253814 ~ 13257640 (+)
G51928 LOC108272117,LOC107678215,LOC107581315,LOC107713111,LOC107551923 other upstream 461893 13222320 ~ 13224946 (+)
AMCG00008837 march9,LOC107664138,LOC107593952,LOC107714987,LOC106583285 other upstream 694114 12980804 ~ 12992725 (+)
G51812 NA other upstream 760045 12925238 ~ 12926794 (+)
G52349 NA other downstream 794141 14481921 ~ 14483255 (+)
AMCG00008910 NA other downstream 840038 14527818 ~ 14542248 (+)
AMCG00008917 smarcc2 other downstream 1050669 14738449 ~ 14754644 (+)
AMCG00008920 NA other downstream 1095263 14783043 ~ 14795184 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other downstream 1119517 14807297 ~ 14811757 (+)

Expression


Co-expression Network